Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcatcccccgatcacccatttctcaactgtatcaattcttttttctttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG

Basic information

species Vitis vinifera
transcript Vv00s0260g00070.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0260g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G21690.1 (Glycine max), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattcttttttctttttttttttcttttcttcttttcttttttactatgctgcaattattggattgatt-ttgagtttttg--ttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                               | |       || ||||       || ||||  ||| |  ||   ||||    ||||  || | ||  ||   || || | | |||   ||  ||||||||||| || |||||||| ||||||||||| ||| |||| ||||||||| | |||||||| ||||| ||||  ||||| ||||| ||||
-------------------------------tctgatggcactcttttgcagagcttattctaatctcccgtttggttttgtcttgctttaaatttttaatgatttatttaatctttaattttcttttcagTTCACTATACTGGGACGTTGCTTGATGGCACTAAGTTTGATTCCAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAG

upper sequence: Vv00s0260g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G46090.2 (Glycine max), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattcttttttctttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
               || || |  || ||||     |||||| | | || ||||      | ||||||||| | ||||| | ||       ||| ||   ||  ||| || ||||||   |||   |||||||||||| ||||||||||| || |||||| |||| ||||| ||||| || ||||   |||| ||||  ||||| || || ||||
--------------gtc-ccgaaatcgcaacgacgccaattcctctgtcgttttca----cctttcttcttctttttttcatta-------attttt---tt--tttcgattttttg--aattgctagTTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAG

upper sequence: Vv00s0260g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G32830.1 (Glycine max), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattcttttttctttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG-
                          ||||  | | | |  |   || || | |  |||||   | |  | ||||| ||     |  |    || | | | |  |||    | ||||   |||   |||||||||||| ||||||||||| || || ||| |||||||||| ||||| || ||||   |||| ||||  ||||| || || |||| 
-------------------------ttcaatcgaaacgacaccaattcctctatcgttttcacctttcttcttcttcttcttcttcttcttcttttcgtaattttttctgttgtttg--aattggtagtTCATTACACGGGGACTTTGCTCGACGGGACTAAGTTCGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG

upper sequence: Vv00s0260g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G25230.1 (Arabidopsis thaliana), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattcttttttctttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                                       |  ||  ||  |   ||       |  | ||||||  |||   | |  |  |||     | ||||  ||||   ||||||  | | |||| ||||||||||| |||||||||||||| ||  |||| ||||| || |||||||| |  || || ||||| ||||| ||||| ||||
--------------------------------------gtaattaattaatcgattcagatactaatgcttttcgatttaggtttttttgaatcga-agcttgagcttga---tttgtt--tctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG

upper sequence: Vv00s0260g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G48570.1 (Arabidopsis thaliana), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattcttttttctttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgatttt--cagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                                                    |  |||    || ||    |    | | |  ||  |  |  | |      | || | || || ||||   |||  |||| ||||||||||| |||||| | ||||| ||  |||| ||||| |||||||| || || ||||| ||||| || || ||||||||||
---------------------------------------------------gtaatttgaaattgctgaagtctgatctgatgataatatatgtgtgaatcaggttctcagattgtgttttcttttgcagTGCATTACACTGGAACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                                          tgttgat  putative branch site (score: 4)
                                      tttttgtt  CT-rich tract
                                      tttttgttgatttt  TA-rich tract