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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttattttatacgtggtagggtttatggcttgtggtttgtgatttgttgcgatttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGGAGGCAGCAGCACCGCTAGTTTCTTTTTTGCAGAATCCGAACGCTGTGCA

Basic information

species Vitis vinifera
transcript Vv00s0252g00070.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71875756|gb|DT024811.1|DT024811
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|161720928|gb|FC070668.1|FC070668
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|71874079|gb|DT023134.1|DT023134
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|71857038|gb|DT006093.1|DT006093
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|161710358|gb|FC061087.1|FC061087
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|71874542|gb|DT023597.1|DT023597
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|34543038|gb|CF511270.1|CF511270
EST:     TTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|71870368|gb|DT019423.1|DT019423
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|26261569|gb|CA812632.1|CA812632
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|110711525|gb|EE088102.1|EE088102
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|110377140|gb|EC942200.1|EC942200
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|110712956|gb|EE088454.1|EE088454
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|34542953|gb|CF511185.1|CF511185
EST:     CGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: CGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|110685212|gb|EE063375.1|EE063375
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|71858778|gb|DT007833.1|DT007833
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|294965851|gb|GW837334.1|GW837334
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|71861236|gb|DT010291.1|DT010291
EST:     TGCCATGGACGTCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|110712683|gb|EE087943.1|EE087943
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|352768501|gb|FQ467457.1|FQ467457
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|110711122|gb|EE087316.1|EE087316
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
EST: gi|110713232|gb|EE088975.1|EE088975
EST:     TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAG                         ATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG
genomic: TGCCATGGACATCCACAAGAGTCTTTACCACACCGAGGACGTTCCTCAAGgtacttttta ... tttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacgtggtagggtttatggcttgtggtttgtgatttgttgcgatttttggcagATATGGTGGAGAGGAGGGCTGAGGTTGTGGCGAGGTTGAAGGCCTTGGAGGAGGCAGCAGCACCGCTAGTTTCTTTTTTGCAGAATCCGAACGCTGTGCA
                                             ttttt  CT-rich tract
                                            attttt  TA-rich tract