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...atatgtttatttgtgttactagttaaactccttcccactgccctttctcatttaatacagttggaagtgattctaactggtgatggtttttattatccagTTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCAGAGATTAAGGCTACTTCAAGTTATGCAGCTGACACATCAAAATTGCCTA
species | Vitis vinifera |
transcript | Vv00s0252g00030.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCGTTCCAAG TTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCAEST: gi|294965712|gb|GW839167.1|GW839167
genomic: ATTCGTTCCAAGgtaccagaaa ... tattatccagTTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCA
EST: ATCTGCACCTACAGAAGCGTCCAGTTTATTCTGTAGCTATTCGTTCCAAG TTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCAEST: gi|37183642|gb|CF602996.1|CF602996
genomic: ATCTGCACCTACAGAAGCGTCCAGTTTATTCTGTAGCTATTCGTTCCAAGgtaccagaaa ... tattatccagTTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCA
EST: ATCTGCACCTACAGAAGCGTCCAGTTTATTCTGTAGCTATTCGTTCCAAG TTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCAEST: gi|110724958|gb|EE101251.1|EE101251
genomic: ATCTGCACCTACAGAAGCGTCCAGTTTATTCTGTAGCTATTCGTTCCAAGgtaccagaaa ... tattatccagTTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCA
EST: ATTCGTTCCAAG TTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCA
genomic: ATTCGTTCCAAGgtaccagaaa ... tattatccagTTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCA
tctcatttaatacagttggaagtgattctaactggtgatggtttttattatccagTTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCAGAGATTAAGGCTACTTCAAGTTATGCAGCTGACACATCAAAATTGCCTA
ttctaac putative branch site (score: 1)
tttttatt putative PPT
atggtttttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtttatttgtgttactagttaaactccttcccactgccctttctcatttaatacagttggaagtgattctaactggtgatggtttttattatccagTTACCAGTTGTTATGAGCCTTGAAGGACATGGCACTGAAACTTCCAGTTCAGAGATTAAGGCTACTTCAAGTTATGCAGCTGACACATCAAAATTGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatgg