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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttcatttatttgactggaatgagactaaattggaaatggctatctttgaacttgttctcccttttccattcccctgttctgaaataatttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGCCTTCAGATCTCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGAT

Basic information

species Vitis vinifera
transcript Vv00s0233g00060.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G44350.1 (Glycine max), 3'ss of exon 1
atttttcatttatttgactggaatgagactaaattggaaatggctatctttgaacttgttctcccttttccattcccctgttctgaaataatt----tctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGCCTTCAGATCTCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGAT-
   | ||   |    | || |  |  | ||   |||   |  | ||| |  || |    |   |  |||   || ||      |    |||||    | | |||| |||| || ||||| |||||| |||||||||||||||| ||||| |||   |||||||| |||||||| |||||| | ||||| ||||| |||  |||| 
--gtctcgcatg---gcctagcctttgcctctgttgattactgttatttgggatcagaataatctgtttgtgtttcctatcattcgtgtaattgaagtgtgcaggCTTGTCAGCAAAGGGTGCAAGTTAGTTGGATGTGGCTCTGCTGTGCCAGCTCTTCAGATTTCTAATGACGATCTTTCGAAAATGGTTGATACTAATGATG

upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G41380.1 (Glycine max), 3'ss of exon 1
atttttcatttatttgactggaatgagactaaattggaaatggctatctttga--------acttgttctcccttttccattcccctgttctgaaataatttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGCCTTCAGATCTCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGAT
         |    || |     | ||  |   ||    |  | ||| || ||        |  || | |   ||| | |||  | |    | || | |  | | |||| |||| || ||||| |||||| |||||||||||||||| ||||| |||   |||||||| || ||||| || ||| | ||||| ||||| |||  ||||
--------atcgcatggcctagcttagcttttgttaattagtgttattttggatcagaataatctggtttgtgtttcctattatcattcgtttaattgaagtgtgcagGCTTGTCAGCAAAGGGTGCAAGTTAGTTGGATGTGGCTCTGCTGTGCCAGCTCTTCAGATTTCCAATGACGACCTTTCGAAAATGGTTGATACTAATGAT

upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G62640.1 (Arabidopsis thaliana), 3'ss of exon 1
atttttcatttatttgac---tggaatgagactaaattggaaatggctatctttgaacttgttctcccttttccattcccctgttctgaaataatttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGCCTTCAGATCTCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGAT
  ||  | || |  |||    |      |   ||         | ||| |    |||  |||  |   |||   |||||  || |      || ||   | ||| | ||    |  ||||||||  |  |||||||||| ||||| || ||||| |||| ||| |||||||||||||| || ||||| ||||| |||  ||||
gcttagctttaagatgatctttaagccaaagttatcacaagtttagcttttgaagaatgtgtctttgatttatgattcctttggttctgtttactt---aaagGCTAGTGCCGAGTGGCTGCAAATTGATTGGATGTGGATCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATAGTTGATACTAATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttgaacttgttctcccttttccattcccctgttctgaaataatttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGCCTTCAGATCTCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGAT
                                              tttctac  CT-rich tract
                                   ttctgaaataattt  TA-rich tract