1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtggaagtgtcttaagcaggaactccatatttttttgaagtaatttcatttaacagatgaattgactgtgggaataacaagatcctcttttgtggcagCAACGTTCTCATGTACCAAAGTTTGGCAATTGGGAAAGTGAAGAAAATGTTCCTTACACAGCCTACTTTGATAAGGCCCGAAAGGGCCGAACAGGAACAA
species | Vitis vinifera |
transcript | Vv00s0231g00040.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tttcatttaacagatgaattgactgtgggaataacaagatcctcttttgtggcagCAACGTTCTCATGTACCAAAGTTTGGCAATTGGGAAAGTGAAGAAAATGTTCCTTACACAGCCTACTTTGATAAGGCCCGAAAGGGCCGAACAGGAACAA
gaataac putative branch site (score: 2)
tcctcttttgt putative PPT
aataacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtggaagtgtcttaagcaggaactccatatttttttgaagtaatttcatttaacagatgaattgactgtgggaataacaagatcctcttttgtggcagCAACGTTCTCATGTACCAAAGTTTGGCAATTGGGAAAGTGAAGAAAATGTTCCTTACACAGCCTACTTTGATAAGGCCCGAAAGGGCCGAACAGGAACAA
ttgtgga
- - - - - - - - -gcaggaa
- - - - - - - - - - - - ctccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataa