1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atttcgattatttactttcaaatgttcatagatgtagacataattttcaatggagatactttttcttcataattcttgttctacctttttatcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCGGCTGTGTATTTGAGTGCCGCCAATAAGACAACAGCTGATCCATCATGT
species | Vitis vinifera |
transcript | Vv00s0225g00130.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGGAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|110390025|gb|EC954908.1|EC954908
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: GCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351013592|gb|FQ429733.1|FQ429733
genomic: GCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|352781104|gb|FQ466417.1|FQ466417
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351023886|gb|FQ423309.1|FQ423309
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351049118|gb|FQ428982.1|FQ428982
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351036343|gb|FQ458718.1|FQ458718
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|110692196|gb|EE071162.1|EE071162
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|29785300|gb|CB342168.2|CB342168
genomic: CCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|349827710|gb|FQ422578.1|FQ422578
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|27755408|gb|CB036163.1|CB036163
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|71859561|gb|DT008616.1|DT008616
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351049355|gb|FQ429098.1|FQ429098
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|71861897|gb|DT010952.1|DT010952
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351046382|gb|FQ452998.1|FQ452998
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|71857747|gb|DT006802.1|DT006802
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|30251568|gb|CB969301.1|CB969301
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG TEST: gi|30251568|gb|CB969301.1|CB969301
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG TEST: gi|30251568|gb|CB969301.1|CB969301
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG TEST: gi|18459105|gb|BM437383.1|BM437383
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: CCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|32250126|gb|CD715945.1|CD715945
genomic: CCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: GCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|349830529|gb|FQ416839.1|FQ416839
genomic: GCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|110385291|gb|EC949801.1|EC949801
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|71856656|gb|DT005711.1|DT005711
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|352794077|gb|FQ479319.1|FQ479319
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351029614|gb|FQ427454.1|FQ427454
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351029308|gb|FQ436702.1|FQ436702
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|352769573|gb|FQ468501.1|FQ468501
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|349832657|gb|FQ422015.1|FQ422015
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|30251605|gb|CB969338.1|CB969338
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG TEST: gi|30251605|gb|CB969338.1|CB969338
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG TEST: gi|30251605|gb|CB969338.1|CB969338
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG TEST: gi|294965073|gb|GW838876.1|GW838876
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|110698273|gb|EE075615.1|EE075615
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CCAACATCATAG CGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351032478|gb|FQ458843.1|FQ458843
genomic: CCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCEST: gi|351054831|gb|FQ462861.1|FQ462861
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
ttcaatggagatactttttcttcataattcttgttctacctttttatcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCGGCTGTGTATTTGAGTGCCGCCAATAAGACAACAGCTGATCCATCATGT
ttcttgttctaccttt CT-rich tract
tttttcttcataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcgattatttactttcaaatgttcatagatgtagacataattttcaatggagatactttttcttcataattcttgttctacctttttatcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGCGGCTGTGTATTTGAGTGCCGCCAATAAGACAACAGCTGATCCATCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - -agacataa
- - - - - - - - - - - - - - - - - - - - - - - -caatgga