Sequence
atgc intronic sequence ATGC exonic sequence...ttccagaatgctacttgtaaaacctttttcttttttcccttttagtatgcatctctatgatatttaacctcattgtaaattatattcatttgactttcagGGTGAAACGCCACACGATTTCAGTATTTGTTGGGGATGAGAGTGGAATTATAAACCGAATTGCAGGGGTTTTTGCTAGGAGGGGGTACAACATTGAGTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0220g00110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os11g14950.1 (Oryza sativa), 3'ss of exon 1
ttccagaatgctacttgtaaaacctttttcttttttcccttttagtatgcatctctatgatatttaacctcattgtaaattatattc---atttgactttcagGGT---GAAACGCCACACGATTTCAGTATTTGTTGGGGATGAGAGTGGAATTATAAACCGAATTGCAGGGGTTTTTGCTAGGAGGGGGTACAACATTGAGTCC
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--cttttaagttataaataatagcatctgccatatagaaatgttaaagatgcctgtatta-gttccattttgatctatatttttttctatgtttatcttgtagGATTATAAAGCGTCATACACTATCAGTTTTTGTTGGAGATGAAAGTGGGATGATTAATCGAATTGCTGGAGTTTTTGCTAGAAGAGGATACAACATTGAG---
upper sequence: Vv00s0220g00110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G077215_T01 (Zea mays), 3'ss of exon 1
ttccagaatgctacttgtaaaacctttttcttttttcccttttagtatgcatctctatgatatttaacctcattgtaa-attatattcatttgactttcagGGT---GAAACGCCACACGATTTCAGTATTTGTTGGGGATGAGAGTGGAATTATAAACCGAATTGCAGGGGTTTTTGCTAGGAGGGGGTACAACATTGAGTCC
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-ggcaaagtgctattaagcatgttcaactaattatttatttttaacatcatttactgcactttctcactgatgtgccttggtgaatttccttaatttgtagGGTTATGAAGCGTCACACGCTATCAGTTTTTGTTGGTGATGAAAGTGGGATGATCAATCGAATTGCTGGGGTTTTTGCTAGAAGAGGATATAACATCGAG---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864153|gb|DT013208.1|DT013208EST: TGTGCTTCCGCTGAGAAAGCAGTGTCTGCTCCTCCCATTCAACGCTCCAA GGTGAAACGCCACACGATTTCAGTATTTGTTGGGGATGAGAGTGGAATTAT
genomic: TGTGCTTCCGCTGAGAAAGCAGTGTCTGCTCCTCCCATTCAACGCTCCAAgtaggtccca ... tgactttcagGGTGAAACGCCACACGATTTCAGTATTTGTTGGGGATGAGAGTGGAATTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgcatctctatgatatttaacctcattgtaaattatattcatttgactttcagGGTGAAACGCCACACGATTTCAGTATTTGTTGGGGATGAGAGTGGAATTATAAACCGAATTGCAGGGGTTTTTGCTAGGAGGGGGTACAACATTGAGTCC
ttcattt CT-rich tract
atatttaacctcattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttccagaatgctacttgtaaaacctttttcttttttcccttttagtatgcatctctatgatatttaacctcattgtaaattatattcatttgactttcagGGTGAAACGCCACACGATTTCAGTATTTGTTGGGGATGAGAGTGGAATTATAAACCGAATTGCAGGGGTTTTTGCTAGGAGGGGGTACAACATTGAGTCC
- - -gaatgct
- - - - - - - - gtaaaac
- - - - - - - - - - - - - - - - - - ccctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacctca