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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttgcaacttctaccttttttttgttgtacatgatgtctcttctcgtttcatttccttagtaacaatatgatctgcatttttctcatgcaagaaatcgtaatgttttgcatgatttcaatttaaaggtgaaacaagaaggcatgaatgctgatcatggattctctttcattgtggagttttgcagGGCAACCGGGGAAAAGGACGTAAGGTTCAAGGTGCTCTACTGTGGAATATGTCACTCCGATCTACACATGCTCAAGAATGAATGGGGCTTTTCCACCTAC

Basic information

species Vitis vinifera
transcript Vv00s0218g00010.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712784|gb|FC062008.1|FC062008
EST:     GCAGCCTCTGACCCATCTGGCGTCCTCTCACCCTTCAAATTCTCCAGAAG                         GGCAACCGGGGAAAAGGACGTAAGGTTCAAGGTGCTCTACTGTGGAATATG
genomic: GCAGCCTCTGACCCATCTGGCGTCCTCTCACCCTTCAAATTCTCCAGAAGgtttttgcaa ... agttttgcagGGCAACCGGGGAAAAGGACGTAAGGTTCAAGGTGCTCTACTGTGGAATATG
EST: gi|161717748|gb|FC068156.1|FC068156
EST:     GCAGCCTCTGACCCATCTGGCGTCCTCTCACCCTTCAAATTCTCCAGAAG                         GGCAACCGGGGAAAAGGACGTAAGGTTCAAGGTGCTCTACTGTGGAATATG
genomic: GCAGCCTCTGACCCATCTGGCGTCCTCTCACCCTTCAAATTCTCCAGAAGgtttttgcaa ... agttttgcagGGCAACCGGGGAAAAGGACGTAAGGTTCAAGGTGCTCTACTGTGGAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaagaaggcatgaatgctgatcatggattctctttcattgtggagttttgcagGGCAACCGGGGAAAAGGACGTAAGGTTCAAGGTGCTCTACTGTGGAATATGTCACTCCGATCTACACATGCTCAAGAATGAATGGGGCTTTTCCACCTAC
                tgctgat  putative branch site (score: 3)
                                  tttcatt  TA-rich tract