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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagacggaatagtggaagaacttttggtggttctaaacttgtttatttattctccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018888|gb|FQ425790.1|FQ425790
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352768987|gb|FQ468178.1|FQ468178
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351025653|gb|FQ426667.1|FQ426667
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352763949|gb|FQ465399.1|FQ465399
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352768598|gb|FQ467810.1|FQ467810
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|110727742|gb|EE104853.1|EE104853
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351052991|gb|FQ456598.1|FQ456598
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351036425|gb|FQ457138.1|FQ457138
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351042407|gb|FQ442874.1|FQ442874
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351018926|gb|FQ426425.1|FQ426425
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|349822117|gb|FQ412381.1|FQ412381
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351055450|gb|FQ442048.1|FQ442048
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|29785435|gb|CB342421.2|CB342421
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352786291|gb|FQ478902.1|FQ478902
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352772603|gb|FQ472078.1|FQ472078
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351049398|gb|FQ449999.1|FQ449999
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352773363|gb|FQ470950.1|FQ470950
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352776558|gb|FQ474860.1|FQ474860
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351054819|gb|FQ462849.1|FQ462849
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|110719906|gb|EE095430.1|EE095430
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351026152|gb|FQ428164.1|FQ428164
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351016274|gb|FQ446134.1|FQ446134
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351022606|gb|FQ447128.1|FQ447128
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351045470|gb|FQ440655.1|FQ440655
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352777763|gb|FQ466816.1|FQ466816
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352781814|gb|FQ469112.1|FQ469112
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352767847|gb|FQ466056.1|FQ466056
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352777749|gb|FQ466802.1|FQ466802
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352768544|gb|FQ467500.1|FQ467500
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352763990|gb|FQ467560.1|FQ467560
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352774203|gb|FQ474726.1|FQ474726
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352782191|gb|FQ470093.1|FQ470093
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352769465|gb|FQ471614.1|FQ471614
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352777353|gb|FQ473987.1|FQ473987
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352768409|gb|FQ469585.1|FQ469585
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352765219|gb|FQ465916.1|FQ465916
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352781785|gb|FQ469083.1|FQ469083
EST:     TCGACCAGCCCGTTCGTAGCGTCTTCCATGGCGGTTCCCTCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|46917672|gb|CN547001.1|CN547001
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352768239|gb|FQ469414.1|FQ469414
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352781462|gb|FQ468306.1|FQ468306
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351038704|gb|FQ464570.1|FQ464570
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352772664|gb|FQ472139.1|FQ472139
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|351036770|gb|FQ457483.1|FQ457483
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352773662|gb|FQ472444.1|FQ472444
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352769660|gb|FQ468588.1|FQ468588
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352780985|gb|FQ466298.1|FQ466298
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|352789755|gb|FQ478570.1|FQ478570
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATG                         GCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
genomic: TCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctt ... cattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA
                ttctgat  putative branch site (score: 3)
                                          tttcattttcc  putative PPT
                                          tttcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagacggaatagtggaagaacttttggtggttctaaacttgtttatttattctccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccagGCATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA