Sequence
atgc intronic sequence ATGC exonic sequence...aaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
aaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaa-gttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
|| |||| | ||| | | | || | | | | |||| || | || || | | | | | |||||||||||||||||||| || || | | ||||||||||||||||| |||||| | || || ||||||||| | ||||| || ||||| |||||||||
------------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G135283_T03 (Zea mays), 3'ss of exon 8
------------------------------------------aaacaatcatacatctgagtttcttttttttctctttttttggtttgacctc-atttgatggtctggaaagtccaagttacatttttaaagtat---ttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
| | |||| | | || | || ||| | || | | | | | ||| | | | | ||| | ||||| | || |||||||||| || || | | ||||| |||||||||||||||||| | ||||| ||||||||| | ||||| || ||||| |||||||||
gcaaggtttctttccacgatagtattttttctccaagatgcaagggagctgcacattattatattacagagaactatacagaacattgaaccgcgatctttttttttttatcaatcaaataattccataatgttatgtgtcgacagATATGCAACAAGCAGAAGGCAATACTTCTAGCAGACATGGCACATATTAGTGGGCTTGTTGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 9
aaacaatcatacatc-tgagtttcttttttttctctttttttgg-tttgacctcatttgatggtctggaaagtccaag-ttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
| | | | | ||| | | | || || | ||| || | |||| | ||||| ||||| ||| |||| | ||| || | |||||||||||| || ||||||||||| || ||||||||||||||||| || ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
---ctttttttcttggtgaagggataaggctgttgttgttgtaccttttactttgaatgatactatggaagtcccaaggttaaatttgtgaagcatgttacagGTTTGTGATAAACAGAAAGCTATATTATTGGCAGATATGGCACACATCAGTGGATTGGTTGCAGCTGGTGTCATCCCATCACCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 8
---------------------------aaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaag-ttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
|| ||| || || || | || ||| | | ||| | | || | | ||||| | ||| || | || | ||| || | |||||| ||||| || ||||||||| | ||||||||||||||||||| || ||||| || ||||| |||||||||||||| || || ||||| |||||||||
gtaacttgttgattatacaaaatgattttttaaatatagataaatattaaattgtcttggaatttgtggttttaaatttgaatggttatttggaacaccaaaggttgaacttgtgaagcatgttacagGTGTGTGATAAACAGAAAGCTGTGCTGTTGGCAGATATGGCACACATCAGTGGATTAGTTGCAGCTGGTGTTATCCCTTCACCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 8
aaacaatcatacatctgagtttctttttttt-ctctttttttgg-tttgacctcatttgatggtctggaaagtccaag-ttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
| | || | | || | || || || | ||| || | |||| | ||||| ||||| ||| ||| | || || | ||||||||| || || ||||||||||| | ||||||||||||||||| || ||||| |||||||| |||||||| |||||||| || ||||| ||||| |||
---cttttttagtttttggtgaagggataaggctgttgttgtaccttttactttgaatgatactatggaagtcccaaggttaattttgtgaaacatgttacagGTTTGCGATAAACAGAAAGCTATACTATTGGCAGATATGGCACACATCAGTGGATTGGTTGCAGCTGGTGTCATCCCATCACCTTTTGATTATGCTGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
aagttacatttttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
aaacaat
- - - -catacat
- - - - - - - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtcca