1 5' 3' | 2 5' 3' | 3 5' 3' |
...agctatggtttgatccctgtgcatcctgaagcatattatgttcacgccaacttgcaggtgaagtttataaactaacaaatattttacatgtttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCGCTTTTGGTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAAC
species | Vitis vinifera |
transcript | Vv00s0207g00220.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCEST: gi|110378448|gb|EC943581.1|EC943581
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCEST: gi|110402069|gb|EC968702.1|EC968702
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCEST: gi|110399404|gb|EC965908.1|EC965908
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCEST: gi|110389361|gb|EC954190.1|EC954190
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCEST: gi|110402082|gb|EC968715.1|EC968715
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
gccaacttgcaggtgaagtttataaactaacaaatattttacatgtttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCGCTTTTGGTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAAC
aactaac putative branch site (score: 1)
aagtttataaactaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctatggtttgatccctgtgcatcctgaagcatattatgttcacgccaacttgcaggtgaagtttataaactaacaaatattttacatgtttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCGCTTTTGGTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAAC
-gctatgg
- - - - - tgatccc
- - - - - - - - - - gcatcct
- - - - - - - - - - - - - - - - - - - - - - -gccaact
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacatg