1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttatgagcttacattggaggtgattggttccctgatttatttatttatttatttttactatgtatttttgggtaatctgctatttcttgttgtttttagGTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGTGGTTCAGTTGTCTTTTACTAAGAGACACGGAAGCTGGAGGGGTGACATA
species | Vitis vinifera |
transcript | Vv00s0194g00070.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTGGGCTG GTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGTEST: gi|110730941|gb|EE108593.1|EE108593
genomic: TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTTGGCTGgtgagtagct ... ttgtttttagGTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGT
EST: TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTTGGCTG GTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGT
genomic: TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTTGGCTGgtgagtagct ... ttgtttttagGTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGT
ttatttatttttactatgtatttttgggtaatctgctatttcttgttgtttttagGTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGTGGTTCAGTTGTCTTTTACTAAGAGACACGGAAGCTGGAGGGGTGACATA
tttcttgttgttttt CT-rich tract
tatttttactatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgagcttacattggaggtgattggttccctgatttatttatttatttatttttactatgtatttttgggtaatctgctatttcttgttgtttttagGTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGTGGTTCAGTTGTCTTTTACTAAGAGACACGGAAGCTGGAGGGGTGACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - -tgattgg
- - - - - - - - - - - - - - -tccctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctat