1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggtgaaggtccccatatgaaaattgaagcttgacagattctaggcatctaatatgcaaaaccattataaatccttaattttgtaatgctatggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATCCTCAGTCTAGTCAATAATCTGAATGCCTACGGTGGTAAAGCACAGTATG
species | Vitis vinifera |
transcript | Vv00s0187g00320.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAG GGCTTANACTATGTGATAGTTGAAGCTAGGAGGCACCAAGTCAGATTGATCEST: gi|30323220|gb|CD006482.1|CD006482
genomic: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAGgttcgttcta ... atggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATC
EST: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAG GGCTTAGACTATGTGATAGTTGAAGCTAGGAGGCACCAAGTCAGATTGATCEST: gi|27579555|gb|CB002250.1|CB002250
genomic: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAGgttcgttcta ... atggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATC
EST: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAG GGCTTAGACTATGTGATAGTTGAAGCTAGGAGGCACCAAGTCAGATTGATCEST: gi|32250159|gb|CD715978.1|CD715978
genomic: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAGgttcgttcta ... atggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATC
EST: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAG GGCTTAGACTATGTGATAGTTGAAGCTAGGAGGCACCAAGTCAGATTGATCEST: gi|30323246|gb|CD006508.1|CD006508
genomic: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAGgttcgttcta ... atggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATC
EST: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAG GGCTTAGACTATGTGATAGTTGAAGCTAGGAGGCACCAAGTCAGATTGATC
genomic: CCAATTCTCTTCAGATATCACCTGGAGTCTTCAATGAAAGAGTGTTTCAGgttcgttcta ... atggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATC
catctaatatgcaaaaccattataaatccttaattttgtaatgctatggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATCCTCAGTCTAGTCAATAATCTGAATGCCTACGGTGGTAAAGCACAGTATG
attataaatccttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtgaaggtccccatatgaaaattgaagcttgacagattctaggcatctaatatgcaaaaccattataaatccttaattttgtaatgctatggttacagGGCTTAGACTATGTGATATTTGAAGCTAGGAGGCACCAAGTCAGATTGATCCTCAGTCTAGTCAATAATCTGAATGCCTACGGTGGTAAAGCACAGTATG
- - - - -tccccat
- - - - - - - - atgaaaa
- - - - - - - - - - - - - - gcttgac
- - - - - - - - - - - - - - - - - - - - - - gcatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaatgc