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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcaatttgaaatttatgggaaatggtagttggtccagtaaaacagtaatgttattttgtgaacaaaaattttaatcttcaagaatggaatttgtcaattgtttttcagGTTCCACCTTCCTATTGCTTATCATGGGCGGGCATCGTCTATTGTTATATCTGGAACTGATCTTATTCGGCCAAA

Basic information

species Vitis vinifera
transcript Vv00s0187g00300.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00300.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G12050.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgtgtcaatttgaaatttatgggaaatggtagttggtccagtaaaacagtaatgttattttgtgaacaaaaattttaatcttcaagaatggaatttgtcaattgtttttcagGTTCCACCTTCCTATTGCTTATCATGGGCGGGCATCGTCTATTGTTATATCTGGAACTGATCTTATTCGGCCAAA
||| ||  || | |  |||    ||  ||  ||||  | || | |||  || | ||           | |||   | | |||  |  ||    |  |  | ||  ||||||||||| |  ||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||  ||||||| |||| 
gtgcgtttatgttactttt----gagctgagagtttcttca-tgaaatggtcaagt-----------cgaaaggatgactctgtattaacatgacattaccat-atttttcagGTTTCGTCTTCCCATTGCATATCATGGACGGGCATCATCTATTGTCATCTCTGGGACTGACATTATTCGACCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgaacaaaaattttaatcttcaagaatggaatttgtcaattgtttttcagGTTCCACCTTCCTATTGCTTATCATGGGCGGGCATCGTCTATTGTTATATCTGGAACTGATCTTATTCGGCCAAA
               ttttaat  putative branch site (score: 3)
                                            ttgtttttc  putative PPT
          aaaaattttaatcttc  TA-rich tract