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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaaaccctagctcctgcatgttagcgtaatctattcctgtgatttcatgtgtctgatttgatttgattttttatttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG

Basic information

species Vitis vinifera
transcript Vv00s0187g00220.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586760|gb|DV222522.1|DV222522
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|161711786|gb|FC058726.1|FC058726
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110685864|gb|EE062959.1|EE062959
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|29783362|gb|CB349482.2|CB349482
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|77577964|gb|DV217740.1|DV217740
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71881457|gb|DT030512.1|DT030512
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110701548|gb|EE079248.1|EE079248
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAAG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|26257347|gb|CA808410.1|CA808410
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110383463|gb|EC947838.1|EC947838
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|34542613|gb|CF510845.1|CF510845
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110396217|gb|EC961898.1|EC961898
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71873805|gb|DT022860.1|DT022860
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71875866|gb|DT024921.1|DT024921
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110701549|gb|EE079249.1|EE079249
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAAG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|27585127|gb|CB007822.1|CB007822
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71867954|gb|DT017009.1|DT017009
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|294964063|gb|GW837866.1|GW837866
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|352790842|gb|FQ475479.1|FQ475479
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|77577299|gb|DV217363.1|DV217363
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|352794704|gb|FQ475202.1|FQ475202
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71873978|gb|DT023033.1|DT023033
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71874611|gb|DT023666.1|DT023666
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71875857|gb|DT024912.1|DT024912
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110712770|gb|EE088107.1|EE088107
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71868316|gb|DT017371.1|DT017371
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|33406423|gb|CF212050.1|CF212050
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110729230|gb|EE105337.1|EE105337
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|77584920|gb|DV221543.1|DV221543
EST:     TGCGATCCTCTCAAGTGCCCGATTCC-AAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: TGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|28961974|gb|CB341013.1|CB341013
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110702874|gb|EE079227.1|EE079227
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|161705722|gb|FC055801.1|FC055801
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110363258|gb|EC926834.1|EC926834
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71856647|gb|DT005702.1|DT005702
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|349830208|gb|FQ420468.1|FQ420468
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|71875634|gb|DT024689.1|DT024689
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|26257452|gb|CA808515.1|CA808515
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|110381363|gb|EC946692.1|EC946692
EST:     CGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: CGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|26257101|gb|CA808164.1|CA808164
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|351013193|gb|FQ424898.1|FQ424898
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|30124839|gb|CB910178.1|CB910178
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
EST: gi|351016605|gb|FQ424032.1|FQ424032
EST:     AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGG                         GCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC
genomic: AAGCTCATGCGATCCTCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaacc ... tttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctattcctgtgatttcatgtgtctgatttgatttgattttttatttatttcagGCAGGTGATTGTTAGGGCTCGAAACTTGCGGGCGGCGGCGAATTACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG
                                      ttttttatttatttc  CT-rich tract
                       tctgatttgatttgat  TA-rich tract