Sequence
atgc intronic sequence ATGC exonic sequence...acacatatatgtatctattgtttgcatgtgtatgtacatgaatcattttgccttgcaaattaagagagtgacgttttcttttttgtgtttttgtgaatagGGAAGAGTACCTTGTTGAATCATCTTTTCCATACCAATTTCAGGGAAATGGATGCATACAAGGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0125g00430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G13380.1 (Glycine max), 3'ss of exon 1
-acacatatatgtatctattgtttgcatgtgtatgtacatgaatcattttgccttgcaaa-ttaagagagt-gacgttttcttttttgtgtttttgtgaatagGGAAGAGTACCTTGTTGAATCATCTTTTCCATACCAATTTCAGGGAAATGGATGCATACAAGGGAAG
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ttaatatgttatcaagtttcgttagctttcttctctttttctctcgctctctcttatggacttgtgtgagttaatattttaattttt---ttcttgtgagcagGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGGATGCTTTCAGGGGAAG
upper sequence: Vv00s0125g00430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G02490.1 (Glycine max), 3'ss of exon 1
-acacatatatgtatctattgtttgcatgtgtatgtacatgaatcattttgccttgcaaa-ttaagagagtgacgttttcttttttgtgtttttgtgaatagGGAAGAGTACCTTGTTGAATCATCTTTTCCATACCAATTTCAGGGAAATGGATGCATACAAGGGAAG
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gagtagtgca-gtttcgttagttttttcgttagctttattctccttttctctcttatgaacttgtgagagtta-atacattttgtgtttttcttttgagcagGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGGATGCTTTCAGGGGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgccttgcaaattaagagagtgacgttttcttttttgtgtttttgtgaatagGGAAGAGTACCTTGTTGAATCATCTTTTCCATACCAATTTCAGGGAAATGGATGCATACAAGGGAAG
cgttttcttttttgtg CT-rich tract
ttttttgtgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acacatatatgtatctattgtttgcatgtgtatgtacatgaatcattttgccttgcaaattaagagagtgacgttttcttttttgtgtttttgtgaatagGGAAGAGTACCTTGTTGAATCATCTTTTCCATACCAATTTCAGGGAAATGGATGCATACAAGGGAAG
acacata
- - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - -gccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa