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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttcgacattttattttttattttcatttgacacactcttttactacacacagGTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGTGGCACGACAACGTATCGCTTCGGTTCCGTTGGCCAG

Basic information

species Selaginella moellendorffii
transcript EFJ38679
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169035602|gb|FE445372.1|FE445372
EST:     GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGG                         GTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGT
genomic: GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGGgtgcgtttcg ... ctacacacagGTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGT
EST: gi|169100699|gb|FE502159.1|FE502159
EST:     GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGG                         GTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGT
genomic: GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGGgtgcgtttcg ... ctacacacagGTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGT
EST: gi|169063506|gb|FE471924.1|FE471924
EST:     GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGG                         GTAAGTCAAGTCGCGTTTGACCCATACTGGACGCCGCCGGCGGACGACGGT
genomic: GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGGgtgcgtttcg ... ctacacacagGTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGT
EST: gi|169038284|gb|FE445296.1|FE445296
EST:     GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGG                         GTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGT
genomic: GCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGGgtgcgtttcg ... ctacacacagGTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttcgacattttattttttattttcatttgacacactcttttactacacacagGTGAGTCAAGTCGCGTTTGATCCATACTGGACGCCGCCGGCGGACGACGGTGGCACGACAACGTATCGCTTCGGTTCCGTTGGCCAG
                           atttgac  putative branch site (score: 4)
                                     ctcttttact  putative PPT
       acattttattttttat  TA-rich tract