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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgacactttttgttcttccgatattctctaatgttgctggacagATTTGCTTGGAAGTGGCAGCCCCTTTGACAGCATATGGCCTTGGAGACTTAGAACTGGGGCTCAAAGGCGAGCATCAGCGCGTAAACGCTGCACTCGCCG

Basic information

species Selaginella moellendorffii
transcript EFJ38623
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169063573|gb|FE471991.1|FE471991
EST:     AGGCGAGCGAAGCTTTAGATTCTTTGCAAAAACGAGCAAAGGAACTCAAT                         ATTTGCTTGGAAGTGGCAGCCCCTTTGACAGCGTATGGCCTTGGAGACTTA
genomic: AGGCGAGTGAAGCTTTAGATTCTTTGCAAAAGCGAGCAAAGGAACTCAATgtaatgacac ... tgctggacagATTTGCTTGGAAGTGGCAGCCCCTTTGACAGCATATGGCCTTGGAGACTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgacactttttgttcttccgatattctctaatgttgctggacagATTTGCTTGGAAGTGGCAGCCCCTTTGACAGCATATGGCCTTGGAGACTTAGAACTGGGGCTCAAAGGCGAGCATCAGCGCGTAAACGCTGCACTCGCCG
                                    ctctaat  putative branch site (score: 3)
                        tttttgtt  TA-rich tract