1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagctcttggcttccttctcttctcttctcttagtcctcctcgagtctaactcgcgagtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTGGGGTGACTATATACTCACTGATCAAGGCCAAAATGGAAGAAGAGAAGAG
species | Selaginella moellendorffii |
transcript | EFJ38162 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTG GAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTGEST: gi|169098868|gb|FE502265.1|FE502265
genomic: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTGgtaagctctt ... gtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTG
EST: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTG GAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTGEST: gi|169086705|gb|FE494342.1|FE494342
genomic: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTGgtaagctctt ... gtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTG
EST: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTG GAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTGEST: gi|169104796|gb|FE505391.1|FE505391
genomic: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTGgtaagctctt ... gtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTG
EST: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTCG GAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCGTTGCCATTGCTGEST: gi|169041079|gb|FE450366.1|FE450366
genomic: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTGgtaagctctt ... gtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTG
EST: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTCG GAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCGTTGCCATTGCTG
genomic: CAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTGgtaagctctt ... gtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTG
tccttctcttctcttctcttagtcctcctcgagtctaactcgcgagtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTGGGGTGACTATATACTCACTGATCAAGGCCAAAATGGAAGAAGAGAAGAG
gtctaac putative branch site (score: 12)
tttttct putative PPT
tttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcttggcttccttctcttctcttctcttagtcctcctcgagtctaactcgcgagtttttctagGAAACAAAATCTCCACCCAAACGGGGATTGGAACCGGCATTGCCATTGCTGGGGTGACTATATACTCACTGATCAAGGCCAAAATGGAAGAAGAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA