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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttactttcccaagttacctccttgacagtgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTTCAAGGTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTA

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32604 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: Vv00s0211g00080.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------------------------------------------------------------------------------------------gtacgtttactttcccaagttacctccttgaca-gtgcct-cgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTTCAAGGTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTA
                                                                                                                         ||   ||        || | || |   |      |   |  | ||||| | || ||||| |  || ||||| |||   || || || ||||| ||||||||||| ||||||||||||||||||||||   | || || ||  | |
gtgagttgttttaaggaaaatatcattttattttaaccatttctcccttgacctagatatcatactccattactatttattaggcaagtgtctgcttcttttgttactgaacttgaggttatattgttggacgtggaactaacatttatactttatatatgtgaagGTTTTGTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGCCCTCACAATCACACAATTGCTGGCTTAGCTGTTGCATTGA

upper sequence: EFJ32604 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 9
------------------------------------------------------------------------------------------------------------------gtacgtttactttcccaagttacctccttgaca-gtgcct-cgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTTCAAGGTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTA
                                                                                                                   ||   ||        || | || |   |      |   |  | ||||| | || ||||| |  || ||||| |||   || || || ||||| ||||||||||| ||||||||||||||||||||||   | || || ||  | |
gtgagttgttttaaggaaaatatcattttattttaaccatttctcccttgacctagatatcctactccattactgttttaagtgtctgcttcttttgttactgaacttgaggttatattgttggacgtggaactaacatttatactttatatatgtgaagGTTTTGTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGCCCTCACAATCACACAATTGCTGGCTTAGCTGTTGCATTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169115018|gb|FE516383.1|FE516383
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGACTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169030970|gb|FE440331.1|FE440331
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169097027|gb|FE498418.1|FE498418
EST:     AAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: AAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169087280|gb|FE491693.1|FE491693
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169019624|gb|FE427973.1|FE427973
EST:     TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169062066|gb|FE469151.1|FE469151
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169044082|gb|FE451668.1|FE451668
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169070247|gb|FE478068.1|FE478068
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169102881|gb|FE505246.1|FE505246
EST:     TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169082302|gb|FE488045.1|FE488045
EST:     GCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: GCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169036058|gb|FE446764.1|FE446764
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169048578|gb|FE454447.1|FE454447
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169080653|gb|FE487174.1|FE487174
EST:     GCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: GCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169088705|gb|FE491539.1|FE491539
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169067649|gb|FE475833.1|FE475833
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169113159|gb|FE514405.1|FE514405
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTTCGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169035181|gb|FE442572.1|FE442572
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169098871|gb|FE502268.1|FE502268
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGT
EST: gi|169077298|gb|FE485600.1|FE485600
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169030299|gb|FE440024.1|FE440024
EST:     TCCGCAAGGGTGTGAAAGAAACT-ACNAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TCCGCAAGGGTGTGAAAGAAACTAAC-AAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169025096|gb|FE434696.1|FE434696
EST:     TCCGCAAGGGTGTGAAAGAAACT-ACAAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TCCGCAAGGGTGTGAAAGAAACTAAC-AAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169114785|gb|FE516046.1|FE516046
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169087153|gb|FE493100.1|FE493100
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169075644|gb|FE482030.1|FE482030
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169070246|gb|FE478067.1|FE478067
EST:     TTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169035575|gb|FE445345.1|FE445345
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169087446|gb|FE492223.1|FE492223
EST:     GAAACTAACAAACAGGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: GAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169061497|gb|FE469596.1|FE469596
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169101299|gb|FE501987.1|FE501987
EST:     TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169019269|gb|FE428182.1|FE428182
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169052582|gb|FE460921.1|FE460921
EST:     TGA-TTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169113402|gb|FE514729.1|FE514729
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169112011|gb|FE510689.1|FE510689
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169113160|gb|FE514406.1|FE514406
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169069491|gb|FE479535.1|FE479535
EST:     GA-TTTCTTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: GATTTTC-TTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169087332|gb|FE491745.1|FE491745
EST:     TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169047242|gb|FE456491.1|FE456491
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169051133|gb|FE458680.1|FE458680
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169096115|gb|FE500275.1|FE500275
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169088634|gb|FE491520.1|FE491520
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169114933|gb|FE515882.1|FE515882
EST:     GATTTTCTTCCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: GATTTTCTT-CCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169094799|gb|FE492950.1|FE492950
EST:     GTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTCCCCTGGGCTT
genomic: GTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169112012|gb|FE510690.1|FE510690
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169019686|gb|FE427489.1|FE427489
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169023492|gb|FE431403.1|FE431403
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169115017|gb|FE516382.1|FE516382
EST:     AAGGGTGTGAAAGAAACTAGCAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: AAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
EST: gi|169044083|gb|FE451669.1|FE451669
EST:     TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAG                         GTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT
genomic: TGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 25 (upstream exon), 34 (downstream exon)
Score: 26

CGTTGTCACCACTACCACGCACAAATCACTTAGAGGTCCTCGTGGAGCAATGATTTTCTTCCGCAAGGGTGTGAAAGAAACTAACAAACAAGGACAGGAGgtacgtttac ... tgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTTCAAGGTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgtttactttcccaagttacctccttgacagtgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTTCAAGGTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTA
                                    ccttgac  putative branch site (score: 26)
                           tttacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtttactttcccaagttacctccttgacagtgcctcgcagGTTCTATACGACTACGCTGAGAAAATAAATGCTGCAGTGTTCCCTGGGCTTCAAGGTGGTCCTCACAATCACACAATTGCTGCGCTTGCCGTGGCTCTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC