1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaggcctttcaagcttgtcccattcgctgatcttatccgtcgtgtggcagTCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAGGCTTACTCTGGATCCTTGGCTGTTCTGGGGACTGTAAC
species | Selaginella moellendorffii |
transcript | EFJ31918 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGACAAACAAGGACGCAAAAAGCTTCTAATCACAAGTTTTGCGGGAATG TCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAGEST: gi|169028073|gb|FE435938.1|FE435938
genomic: TGGACAAACAAGGACGCAAAAAGCTTCTAATCACAAGTTTTGCGGGAATGgtaaggcctt ... cgtgtggcagTCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAG
EST: TGGACAAACAAGGACGCAAAAAGCTTCTAATCACAAGTTTTGCGGGAATG TCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAGEST: gi|169087639|gb|FE492286.1|FE492286
genomic: TGGACAAACAAGGACGCAAAAAGCTTCTAATCACAAGTTTTGCGGGAATGgtaaggcctt ... cgtgtggcagTCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAG
EST: TGGACAAACAAGGACGCAAAAAGCTTCTAATCACAAGTTTTGCGGGAATG TCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAG
genomic: TGGACAAACAAGGACGCAAAAAGCTTCTAATCACAAGTTTTGCGGGAATGgtaaggcctt ... cgtgtggcagTCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAG
gtaaggcctttcaagcttgtcccattcgctgatcttatccgtcgtgtggcagTCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAGGCTTACTCTGGATCCTTGGCTGTTCTGGGGACTGTAAC
cgctgat putative branch site (score: 22)
atcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcctttcaagcttgtcccattcgctgatcttatccgtcgtgtggcagTCAATATCAATGCTCGTATTGGCCCTTGCTCTTTCATGGAAGGCATTGGAGGCTTACTCTGGATCCTTGGCTGTTCTGGGGACTGTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT