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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctctgcattagctattttacatactttaggatctaattgtgatcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAGGATCAAACTCCTGAAA

Basic information

species Selaginella moellendorffii
transcript EFJ31227
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31227 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA07G36680.1 (Glycine max), 3'ss of exon 12
---------------gtaacctctgcattagctattttac----atactttaggatctaattgtg-atcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAA---GGATCA-AACTCCTGAAA
                |  | |||   ||  |   || |     ||| ||   ||   | || |  || ||  ||||   ||| ||||| ||||  ||||||||||| ||||  ||||||||||||||||| |||||||| || || ||   ||| ||    ||| | || ||||    
gttatatttaaattcattgcttctttgtttacctcttcatttgaatatttattgagggagttctttattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAATCAAGATGATAAGTCCT----

upper sequence: EFJ31227 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 12
---------------gtaacctctgcattagctatttt------acatactttaggatctaattgtg-atcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAG---GATCA-AACTCCTGAAA
                |  | |||   ||  |   ||       | ||| ||   ||   | || |  || ||  ||||   ||| ||||| ||||  ||||||||||| ||||  ||||||||||||||||| |||||||| || || ||   ||| |||   ||| | || ||||    
gttatatttatattcattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattttacagGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCT----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacctctgcattagctattttacatactttaggatctaattgtgatcttctagGACACTGTCGATCCTGTCATAGATGAAATGCTGGCAAGATTTGTCGTTGACAGTCATTTCAAGTCTCATCCAAACATTGCGAAGGATCAAACTCCTGAAA
                                   atctaat  putative branch site (score: 3)
                                               tcttct  putative PPT
                 tattttacatacttta  TA-rich tract