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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcatgtaggcatttttctcgacttccagctccgttttgcctctctttgtagCTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAACCAGGTTCGTTTGCGATTCCAATCGCAAGCATCAAAGCTTATCTCAATG

Basic information

species Selaginella moellendorffii
transcript EFJ30553
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169096655|gb|FE496785.1|FE496785
EST:     CTGTGCAAGACGCTCCACCGTTTGACGTCTCGAGCATCGCTTCGCTACAG                         CTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAA
genomic: CTGTGCAAGACGCTCCACCGTTTGACGTCTCGAGCATCGCTTCGCTACAGgtatgttcat ... ctctttgtagCTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAA
EST: gi|169096654|gb|FE496784.1|FE496784
EST:     CTGTGCAAGACGCTCCACCGTTTGACGTCTCGAGCATCGCTTCGCTACAG                         CTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAA
genomic: CTGTGCAAGACGCTCCACCGTTTGACGTCTCGAGCATCGCTTCGCTACAGgtatgttcat ... ctctttgtagCTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAA
EST: gi|169116266|gb|FE517213.1|FE517213
EST:     CTGTGCAAGACGCTCCACCGTTTGACGTCTCGAGCATCGCTTCGCTACAG                         CTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAA
genomic: CTGTGCAAGACGCTCCACCGTTTGACGTCTCGAGCATCGCTTCGCTACAGgtatgttcat ... ctctttgtagCTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttcatgtaggcatttttctcgacttccagctccgttttgcctctctttgtagCTCATGTACAGCAAGTTCGAGTACGATGGCAGGCTTAATCCAACCTTTGAACCAGGTTCGTTTGCGATTCCAATCGCAAGCATCAAAGCTTATCTCAATG
                                ctccgttttgcctctc  CT-rich tract
              atttttct  TA-rich tract