1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtgcttgtttctttcttctttatattttctcattgctgatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAAATGTTGACGCTTGCGACTGGCTAGCAGGAGCAATTCGTGGAATGGAAC
species | Selaginella moellendorffii |
transcript | EFJ29370 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAG TATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAEST: gi|169024393|gb|FE436216.1|FE436216
genomic: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAGgtgcttgttt ... gatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
EST: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAG TATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAEST: gi|169088897|gb|FE492875.1|FE492875
genomic: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAGgtgcttgttt ... gatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
EST: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAG TATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAEST: gi|169021928|gb|FE430497.1|FE430497
genomic: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAGgtgcttgttt ... gatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
EST: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAG TATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAEST: gi|169097102|gb|FE498948.1|FE498948
genomic: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAGgtgcttgttt ... gatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
EST: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAG TATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAEST: gi|169022074|gb|FE430955.1|FE430955
genomic: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAGgtgcttgttt ... gatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
EST: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAG TATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAEST: gi|169080384|gb|FE488946.1|FE488946
genomic: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAGgtgcttgttt ... gatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
EST: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAG TATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
genomic: TTGTTGCGGAGCTTAATAAACTTCTGGAAAGACTACATGTTCCTCCTCAGgtgcttgttt ... gatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAA
gtgcttgtttctttcttctttatattttctcattgctgatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAAATGTTGACGCTTGCGACTGGCTAGCAGGAGCAATTCGTGGAATGGAAC
tgctgat putative branch site (score: 7)
tttctttcttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttgtttctttcttctttatattttctcattgctgatacatcagTATGCAACACTGCTGACAAGCGGAGCGTTTGATGAATCGAGAATGCCACAAAATGTTGACGCTTGCGACTGGCTAGCAGGAGCAATTCGTGGAATGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA