1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagccttgtgtttaaaatgggaactcgctccgtcattgacacttttccccccttctcagGTAGCTCGAAAGGATGCTAACGTAGCAGAAACCAGTAGCCCAGCAGCAGCAGTCATGCGGCCTCGGCCACCAGTCCGAATGCCCATGAGAGCAGCGTTCC
species | Selaginella moellendorffii |
transcript | EFJ28903 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACAGGGCCCTGTCTCTAAACGAGTCGAGTTTACTTTCGAGACCCATACGG GTAGCTCGAAAGGATGCTAACGTAGCAGAAACCAGTAGCCCAGCAGCAGCAEST: gi|169073566|gb|FE482669.1|FE482669
genomic: ACAGGGCCCTGTCTCTAAACGAGTCGAGTTTACTTTCGAGACCCATACGGgtaagccttg ... cccttctcagGTAGCTCGAAAGGATGCTAACGTAGCAGAAACCAGTAGCCCAGCAGCAGCA
EST: ACAGGGCCCTGTCTCTAAACGAGTCGAGTTTACTTTCGAGACCCATACGG GTAGCTCGAAAGGATGCTAACGTAGCAGAAACCAGTAGCCCAGCAGCAGCA
genomic: ACAGGGCCCTGTCTCTAAACGAGTCGAGTTTACTTTCGAGACCCATACGGgtaagccttg ... cccttctcagGTAGCTCGAAAGGATGCTAACGTAGCAGAAACCAGTAGCCCAGCAGCAGCA
cttgtgtttaaaatgggaactcgctccgtcattgacacttttccccccttctcagGTAGCTCGAAAGGATGCTAACGTAGCAGAAACCAGTAGCCCAGCAGCAGCAGTCATGCGGCCTCGGCCACCAGTCCGAATGCCCATGAGAGCAGCGTTCC
cattgac putative branch site (score: 12)
ttgacacttttccccc CT-rich tract
tttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttgtgtttaaaatgggaactcgctccgtcattgacacttttccccccttctcagGTAGCTCGAAAGGATGCTAACGTAGCAGAAACCAGTAGCCCAGCAGCAGCAGTCATGCGGCCTCGGCCACCAGTCCGAATGCCCATGAGAGCAGCGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG