1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtcggtctttcgtttgtttgttggtgaatgtctgctcaactgcgtagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCTATGAAGCAAATCTTGCTCTTACTTGCCAG
species | Selaginella moellendorffii |
transcript | EFJ28514 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAG GCTTATTTGTTTTATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCEST: gi|169114213|gb|FE515748.1|FE515748
genomic: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAGgtcggtcttt ... tagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTC
EST: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAG GCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCEST: gi|169097606|gb|FE499244.1|FE499244
genomic: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAGgtcggtcttt ... tagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTC
EST: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAG GCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCEST: gi|169067020|gb|FE474437.1|FE474437
genomic: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAGgtcggtcttt ... tagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTC
EST: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAG GCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCEST: gi|169103889|gb|FE508373.1|FE508373
genomic: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAGgtcggtcttt ... tagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTC
EST: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAG GCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCEST: gi|169044330|gb|FE453268.1|FE453268
genomic: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAGgtcggtcttt ... tagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTC
EST: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAGTCCACAGEST: gi|169106983|gb|FE505954.1|FE505954
genomic: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGT---G----CAGgtcggtcttt ... tagt
EST: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAG GCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTC
genomic: ATTTTGGATCAGAAATTTTGCCTGCTTCAGCAAAAGAGTACAACGTGCAGgtcggtcttt ... tagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTC
gtcggtctttcgtttgtttgttggtgaatgtctgctcaactgcgtagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCTATGAAGCAAATCTTGCTCTTACTTGCCAG
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtctttcgtttgtttgttggtgaatgtctgctcaactgcgtagttcacagGCTTATTTGTTTAATGATTACTGGGAGGACATCGGGACGATCAAGTCGTTCTATGAAGCAAATCTTGCTCTTACTTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA