1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtacctgttaaactatgtcgtcatggtttatttacgtgtgttgcactggcagGAAAACACGCTGCAAAATTTGCAAAAGGAACTTGCAGAGAGACCTACATCTAAACAGTTGGATGATCTTAGGAAGCAAGTGAAAATACTTCAG
species | Selaginella moellendorffii |
transcript | EFJ26077 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAG GAAA-CACGCTGCAAAATT-GCAAAAAGGA-CTTGCAGEST: gi|169083419|gb|FE491905.1|FE491905
genomic: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAGgtacctgtta ... gcactggcagGAAAACACGCTGCAAAATTTGCAAAA-GGAACTTGCAG
EST: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAG GAAAACACGCTGCAAAATTTGCAAAAGGAACTTGCAGAGAGACCTACATCTEST: gi|169026841|gb|FE434218.1|FE434218
genomic: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAGgtacctgtta ... gcactggcagGAAAACACGCTGCAAAATTTGCAAAAGGAACTTGCAGAGAGACCTACATCT
EST: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAG GAAAACACGTTGCAAAATTTGCAAAAGGAACTTEST: gi|169025108|gb|FE433876.1|FE433876
genomic: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAGgtacctgtta ... gcactggcagGAAAACACGCTGCAAAATTTGCAAAAGGAACTT
EST: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAG GAAAACACGCTGCAAAATTTGCAAAAGGAACTTGCAGAGAGACCTACATCT
genomic: ATGAACACATTGCAGAGATCAGAAAGCTAAATGCCTACATTCATGATAAGgtacctgtta ... gcactggcagGAAAACACGCTGCAAAATTTGCAAAAGGAACTTGCAGAGAGACCTACATCT
gtacctgttaaactatgtcgtcatggtttatttacgtgtgttgcactggcagGAAAACACGCTGCAAAATTTGCAAAAGGAACTTGCAGAGAGACCTACATCTAAACAGTTGGATGATCTTAGGAAGCAAGTGAAAATACTTCAG
tttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctgttaaactatgtcgtcatggtttatttacgtgtgttgcactggcagGAAAACACGCTGCAAAATTTGCAAAAGGAACTTGCAGAGAGACCTACATCTAAACAGTTGGATGATCTTAGGAAGCAAGTGAAAATACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG