1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcagttcctctttttctccaactcttttgctcactctctggagaatgaaaaccagATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGCAGATGAATCCGAAGGCGCAGACATACTCATG
species | Selaginella moellendorffii |
transcript | EFJ25898 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCATTCAGAGAAGCTTTGGACTCAAATCCCCGTTTTGGAGATAAGAAAAC ATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGCEST: gi|169049019|gb|FE454979.1|FE454979
genomic: CCATTCAGAGAAGCTTTGGACTCAAATCCCCGTTTTGGAGATAAGAAAACgtaagcagtt ... tgaaaaccagATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGC
EST: AGAGAAGCTTTGGACTCAAATCCCCGTTTTGGAGATAAGAAAAC ATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGCEST: gi|169025618|gb|FE436531.1|FE436531
genomic: AGAGAAGCTTTGGACTCAAATCCCCGTTTTGGAGATAAGAAAACgtaagcagtt ... tgaaaaccagATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGC
EST: CCATTCAGAGAAGCTTTGGACTCAAATCCCCGTTTTGGAGATAAGAAAAC ATACCAGATGAACCCGGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGC
genomic: CCATTCAGAGAAGCTTTGGACTCAAATCCCCGTTTTGGAGATAAGAAAACgtaagcagtt ... tgaaaaccagATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGC
gcagttcctctttttctccaactcttttgctcactctctggagaatgaaaaccagATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGCAGATGAATCCGAAGGCGCAGACATACTCATG
tgctcac putative branch site (score: 27)
aatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagttcctctttttctccaactcttttgctcactctctggagaatgaaaaccagATACCAGATGAACCCAGGCAACTACAGGGAGGCTCTTCTCGAAGTACACGCAGATGAATCCGAAGGCGCAGACATACTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG