1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgtgtattcatactcaggagatgcttttgtgctgaatatttcgttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACACAAGTCGAAGCAGACATTCGTCCTTTCAGAGGATTATTGCTTGGACTGT
species | Selaginella moellendorffii |
transcript | EFJ25893 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACAEST: gi|169093899|gb|FE493487.1|FE493487
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACAEST: gi|169047127|gb|FE457208.1|FE457208
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACAEST: gi|169040292|gb|FE448370.1|FE448370
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACAEST: gi|169052239|gb|FE463295.1|FE463295
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACAEST: gi|169029732|gb|FE437403.1|FE437403
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
gtatgtgtattcatactcaggagatgcttttgtgctgaatatttcgttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACACAAGTCGAAGCAGACATTCGTCCTTTCAGAGGATTATTGCTTGGACTGT
tttcgtt CT-rich tract
tgaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtattcatactcaggagatgcttttgtgctgaatatttcgttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACACAAGTCGAAGCAGACATTCGTCCTTTCAGAGGATTATTGCTTGGACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT