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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagaaaacgtttttttcttttttcttgtttttgaggctacttttctttgtcctctcttttagCCAGAGAAGAAGAACCCGAGCTTGACAGCAATGGATTGGGTGAAATTTCTACTCTCAGCGATCATTGGCTTC

Basic information

species Selaginella moellendorffii
transcript EFJ25114
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25114 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 3'ss of exon 9
------------------------------gtaagtagaaaacgtttttttct-----tttttcttgtttttgaggctacttttctttgtcctctct----tttagCCAGAGAAGAAGAACCCGAGCTTGACAGCAATGGATTGGGTGAAATTTCTACTCTCAGCGATCATTGGCTTC
                               |   || |  |  ||  | |||      || | || || ||| |  ||| |    ||    | |||    |||||||||||||||||||||| || |||||  ||||||||||||||||||||||  | || ||  |  | || || 
gtaatatagaagcgtgcttcatatgtgatgttttttatatcattttcctctctggttccttctgttcttcttgtgtgtacctgatattagtatttctatgatttagCCAGAGAAGAAGAACCCTAGTTTGACTCCAATGGATTGGGTGAAATTTCTTATTTCTGCTGTGTTAGGTTTG

upper sequence: EFJ25114 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G527387_T01 (Zea mays), 3'ss of exon 9
---------------------------------gtaagtagaaaacgtttttttctttttt-cttg-tttttgaggctacttttc-----tttgt-cctctcttttagCCAGAGAAGAAGAACCCGAGCTTGACAGCAATGGATTGGGTGAAATTTCTACTCTCAGCGATCATTGGCTTC
                                  ||| |  |  || |||| |  | |||| |||| | |   || |||  | ||     | |||   | | || |||||||||||||||||||| ||||| ||| | ||||||||||| | ||||||| | || ||  | ||||| || 
gtaatagtgtgtgtattgcgtgtgtaccggcacttaatttaagcaccttttgtcatgttttacttgctctcctagactatctgtcaccagtatgtatttgtgttgtagCCAGAGAAGAAGAACCCAAGCTTAACACCGATGGATTGGGTCACATTTCTAATTTCTGCTGTGATTGGTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttttttcttttttcttgtttttgaggctacttttctttgtcctctcttttagCCAGAGAAGAAGAACCCGAGCTTGACAGCAATGGATTGGGTGAAATTTCTACTCTCAGCGATCATTGGCTTC
                             ctacttttctttgtcc  CT-rich tract
          ttttttcttgttttt  TA-rich tract