1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
tattgtttctccagttttacttattacgctgaagcttgattgttccaggTATGCAATATTTAGAGGTGCAAACAAGCAAAAGCACGAGTTCAAGAAGAACCCAAAGGCTCCAATATGGGGGAAACCACCTGTTCTCATCGGAGGAAAAC
species | Selaginella moellendorffii |
transcript | EFJ22157 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAATCACTCGAATGGCTGCATTTTTAAATGCTCTTGTCTTCTTGGCGGGG TATGCAATATTTAGAGGTGCAAACAAGCAAAAGCACGAGTTCAAGAAGAACEST: gi|169067260|gb|FE473871.1|FE473871
genomic: AAATCACTCGAATGGCTGCATTTTTAAATGCTCTTGTCTTCTTGGCAGGGtattgtttct ... ttgttccaggTATGCAATATTTAGAGGTGCAAACAAGCAAAAGCACGAGTTCAAGAAGAAC
EST: AAATCACTCGAATGGCTGCATTTTTAAATGCTCTTGTCTTCTTGGCGGGG TATGCAATATTTAGAGGTGCAAACAAGCAAAAGCACGAGTTCAAGAAGAAC
genomic: AAATCACTCGAATGGCTGCATTTTTAAATGCTCTTGTCTTCTTGGCAGGGtattgtttct ... ttgttccaggTATGCAATATTTAGAGGTGCAAACAAGCAAAAGCACGAGTTCAAGAAGAAC
tattgtttctccagttttacttattacgctgaagcttgattgttccaggTATGCAATATTTAGAGGTGCAAACAAGCAAAAGCACGAGTTCAAGAAGAACCCAAAGGCTCCAATATGGGGGAAACCACCTGTTCTCATCGGAGGAAAAC
gcttgat putative branch site (score: 5)
ttgttcc CT-rich tract
agttttacttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtttctccagttttacttattacgctgaagcttgattgttccaggTATGCAATATTTAGAGGTGCAAACAAGCAAAAGCACGAGTTCAAGAAGAACCCAAAGGCTCCAATATGGGGGAAACCACCTGTTCTCATCGGAGGAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA