1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgatgattgggtttcgtggagtagtaaccttcgtcttttggttttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGAGCTGAGGAAGATCGGTTTCGATTTATTGCGGTGGTATCTCTCGTAATT
species | Selaginella moellendorffii |
transcript | EFJ20478 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATG GCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGEST: gi|169057441|gb|FE465745.1|FE465745
genomic: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATGgtgagtgatg ... ttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
EST: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATG GCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGEST: gi|169054797|gb|FE460593.1|FE460593
genomic: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATGgtgagtgatg ... ttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
EST: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATG GCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGEST: gi|169062160|gb|FE469700.1|FE469700
genomic: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATGgtgagtgatg ... ttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
EST: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATG GCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCANGAGGEST: gi|169099662|gb|FE502643.1|FE502643
genomic: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATGgtgagtgatg ... ttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
EST: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATG GCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGEST: gi|169040608|gb|FE449739.1|FE449739
genomic: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATGgtgagtgatg ... ttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
EST: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATG GCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGEST: gi|169050669|gb|FE457839.1|FE457839
genomic: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATGgtgagtgatg ... ttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
EST: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATG GCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
genomic: AGCTGCTACGATACGATCACCAAGAGCGACTGACCGCCAGAGAGGCTATGgtgagtgatg ... ttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGG
agtgatgattgggtttcgtggagtagtaaccttcgtcttttggttttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGAGCTGAGGAAGATCGGTTTCGATTTATTGCGGTGGTATCTCTCGTAATT
tagtaac putative branch site (score: 40)
ttttgtttcc putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgatgattgggtttcgtggagtagtaaccttcgtcttttggttttgtttccagGCGCACGCGTACTTTTACCCGGTTCGTCTCTCGGAATCAAACAGCAGGAGGAGCTGAGGAAGATCGGTTTCGATTTATTGCGGTGGTATCTCTCGTAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA