1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcgacctttctcccgcgactgcttttctttcccaagggataacgtttttcggttttatcagTTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTCGGACCAAAAGTTCAG
species | Selaginella moellendorffii |
transcript | EFJ19637 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGG TTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTCEST: gi|169109748|gb|FE511819.1|FE511819
genomic: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGGgtgcgacctt ... gttttatcagTTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTC
EST: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGG TTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTCEST: gi|169108705|gb|FE510504.1|FE510504
genomic: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGGgtgcgacctt ... gttttatcagTTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTC
EST: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGG TTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTCEST: gi|169115598|gb|FE517808.1|FE517808
genomic: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGGgtgcgacctt ... gttttatcagTTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTC
EST: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGG TTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTC
genomic: CTGGAACTGGAAGATGCAGTCCACACGGCAATCCTGACTTTGAAAGAAGGgtgcgacctt ... gttttatcagTTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTC
tttctcccgcgactgcttttctttcccaagggataacgtttttcggttttatcagTTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTCGGACCAAAAGTTCAG
ggataac putative branch site (score: 75)
ttttatc putative PPT
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgacctttctcccgcgactgcttttctttcccaagggataacgtttttcggttttatcagTTTCGAGGGGCAAATTTCCGGGAAGAATATCGAGATTGGCATCGTGGGGTCGGACCAAAAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA