1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagaagttcaagcactactgtttaaaagcttgtctgactttctccttggtgttctatccagCCCGCATTGCTGTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCACTGCCTTGCGAAAGGGGAGATCAAACCG
species | Selaginella moellendorffii |
transcript | EFJ18240 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGGAATCGTGGCCACCATAATCGTCATGAACGTGTTTCAAGCTGCTCAG CCCGCATTGCTGTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCACEST: gi|169110321|gb|FE512080.1|FE512080
genomic: CTGGAATCGTGGCCACCATAATCGTCATGAACGTGTTTCAAGCTGCTCAGgtagaagttc ... ttctatccagCCCGCATTGCTGTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCAC
EST: CTGGAATCGTGGCCACCATAATCGTCATGAACGTGTTTCAAGCTGCTCAG CCTGCATTGCTCTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCACEST: gi|169074072|gb|FE481732.1|FE481732
genomic: CTGGAATCGTGGCCACCATAATCGTCATGAACGTGTTTCAAGCTGCTCAGgtagaagttc ... ttctatccagCCCGCATTGCTGTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCAC
EST: CTGGAATCGTGGCCACCATAATCGTCATGAACGTGTTTCAAGCTGCTCAG CCTGCATTGCTCTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCAC
genomic: CTGGAATCGTGGCCACCATAATCGTCATGAACGTGTTTCAAGCTGCTCAGgtagaagttc ... ttctatccagCCCGCATTGCTGTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCAC
ttcaagcactactgtttaaaagcttgtctgactttctccttggtgttctatccagCCCGCATTGCTGTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCACTGCCTTGCGAAAGGGGAGATCAAACCG
gtctgac putative branch site (score: 9)
ttctatcc putative PPT
tgtttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaagttcaagcactactgtttaaaagcttgtctgactttctccttggtgttctatccagCCCGCATTGCTGTACATTGTACCGTGCGTGACGGGCTTCTTGGCCGTTCACTGCCTTGCGAAAGGGGAGATCAAACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA