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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgttccttgtaggcagtgactgtgatttaatttgcgtttttctctccagTCTTGAGAGGGACGCACTCCCTTTGTTTAGGATGCTCCGTGAGAACTACAAGTCAAGTCTAGACCGGGATCCTTCTCTTAACGAG

Basic information

species Selaginella moellendorffii
transcript EFJ17603
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169098787|gb|FE503315.1|FE503315
EST:     AGCGTCTTGGCATCTCCTCTCACACATTTGGCGAAGTTTATCTTGCTAAC                         TCTTGAGAGGGACGCACTCCCTTTGTTTAGGATGCTCCGTGAGAACTACAA
genomic: AGCGTCTTGGCATCTCCTCTCACACATTTGGCGAAGTTTATCTTGCTAACgtaagctgtt ... ttctctccagTCTTGAGAGGGACGCACTCCCTTTGTTTAGGATGCTCCGTGAGAACTACAA
EST: gi|169060428|gb|FE467933.1|FE467933
EST:     AGCGTCTTGGCATCTCCTCTCACACATTTGGCGAAGTTTATCTTGCTAAC                         TCTTGAGAGGGACGCCCTCCCTTTGTTTAGGATGCTCCGCGAGAACTACAA
genomic: AGCGTCTTGGCATCTCCTCTCACACATTTGGCGAAGTTTATCTTGCTAACgtaagctgtt ... ttctctccagTCTTGAGAGGGACGCACTCCCTTTGTTTAGGATGCTCCGTGAGAACTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagctgttccttgtaggcagtgactgtgatttaatttgcgtttttctctccagTCTTGAGAGGGACGCACTCCCTTTGTTTAGGATGCTCCGTGAGAACTACAAGTCAAGTCTAGACCGGGATCCTTCTCTTAACGAG
                              atttaat  putative branch site (score: 4)
                                    tttgcgtttttctctc  CT-rich tract
                            tgatttaattt  TA-rich tract