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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatattacgttttcatcggtgaaggctcctgataatattttaacactcgcagAGATGCGGTGGAGTTTCTGGTGAACGAAGGTTACGTTTATTCCACTGTCGACGACGAGCATTTCAAGTCCACCAACACTTACTAA

Basic information

species Selaginella moellendorffii
transcript EFJ17203
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169111399|gb|FE511429.1|FE511429
EST:     GTTGATGAGATTGCGAGACGTATTACTGGTTTCTCCAAGAAGCAAGTCAG                         GGATGCGGTGGAGTTTCTGGTGAACGAAGGCTACGTTTACTCCACTGTCGA
genomic: GTTGATGAGATTGCGAGACGCATTACTGGTTTCTCCAAGAAGCAAGTCAGgtgatattac ... acactcgcagAGATGCGGTGGAGTTTCTGGTGAACGAAGGTTACGTTTATTCCACTGTCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatattacgttttcatcggtgaaggctcctgataatattttaacactcgcagAGATGCGGTGGAGTTTCTGGTGAACGAAGGTTACGTTTATTCCACTGTCGACGACGAGCATTTCAAGTCCACCAACACTTACTAA
                                        ttttaac  putative branch site (score: 2)
                                 tgataatattttaaca  TA-rich tract