1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacttggtcttctttttctttccatgactttgtgtttttcgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCATTCGACTGTGCACTGTCTCACGGGAACTTCACGTACATTCAGCTGGTAT
species | Selaginella moellendorffii |
transcript | EFJ15634 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169103570|gb|FE507612.1|FE507612
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169099654|gb|FE501088.1|FE501088
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169098302|gb|FE499931.1|FE499931
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAATCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169052044|gb|FE460383.1|FE460383
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAATCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169096097|gb|FE500049.1|FE500049
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAATCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169113873|gb|FE515928.1|FE515928
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169110840|gb|FE509323.1|FE509323
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAATCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169043051|gb|FE452405.1|FE452405
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169030088|gb|FE440528.1|FE440528
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169027392|gb|FE433703.1|FE433703
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAATCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCAEST: gi|169102892|gb|FE505257.1|FE505257
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
EST: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAG GTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
genomic: TGATAGGAGCGGATCGAGTCGTTTCCGCCTTGACGAGTGACGCTTCACAGgtaacttggt ... cgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCA
gtaacttggtcttctttttctttccatgactttgtgtttttcgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCATTCGACTGTGCACTGTCTCACGGGAACTTCACGTACATTCAGCTGGTAT
tgtttttcgttcctt CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttggtcttctttttctttccatgactttgtgtttttcgttccttagGTTGGCTTGCAAGCTTGGAACTCCGCTCGAGACATTAACGGCCAGTCTCCATTCGACTGTGCACTGTCTCACGGGAACTTCACGTACATTCAGCTGGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG