Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttttcttcctatctttccctcatgttttctggcctgtggattttcagAGCTTTAAAAACGTCCTTGGACGCAACATTGCCGCAATGAGCTACGTACAG

Basic information

species Selaginella moellendorffii
transcript EFJ15498
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169067994|gb|FE476373.1|FE476373
EST:     CAGCCCGTGCAATTGTAACCAGTGTTCAAGAAATTCACGGCAGCGTGCGG                         AGCTTTAAAAACGTCCTTGGACGCAACATTGCCGCAATGAGCTACGTACAG
genomic: CAGCCCGTGCAATTGTAACCAGTGTTCAAGAAATTCACGGCAGCGTGCGGgtaaactttt ... ggattttcagAGCTTTAAAAACGTCCTTGGACGCAACATTGCCGCAATGAGCTACGTACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaacttttcttcctatctttccctcatgttttctggcctgtggattttcagAGCTTTAAAAACGTCCTTGGACGCAACATTGCCGCAATGAGCTACGTACAG
                                                 ttttc  CT-rich tract
     aactttt  TA-rich tract