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gtgtgtgcaaattgccttctcacagttttggtaacagcttgaaagttttcaaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAGAATTCATCGAGAAGAAACTGG
species | Selaginella moellendorffii |
transcript | EFJ15375 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAG CATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAEST: gi|169097016|gb|FE497601.1|FE497601
genomic: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAGgtgtgtgcaa ... caaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACA
EST: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGNCGAG CATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAEST: gi|169020256|gb|FE430333.1|FE430333
genomic: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAGgtgtgtgcaa ... caaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACA
EST: TAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAG CATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAEST: gi|169026291|gb|FE432654.1|FE432654
genomic: TAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAGgtgtgtgcaa ... caaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACA
EST: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAG CATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAEST: gi|169055218|gb|FE462418.1|FE462418
genomic: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAGgtgtgtgcaa ... caaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACA
EST: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAG CATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAEST: gi|169094539|gb|FE494504.1|FE494504
genomic: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAGgtgtgtgcaa ... caaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACA
EST: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAG CATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACA
genomic: TTAATCGTAATCGCTTAATTGCACTTATTTCTGCCATTGTTTTGGCCGAGgtgtgtgcaa ... caaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACA
gtgcaaattgccttctcacagttttggtaacagcttgaaagttttcaaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAGAATTCATCGAGAAGAAACTGG
tggtaac putative branch site (score: 4)
ttttc putative PPT
aaagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgcaaattgccttctcacagttttggtaacagcttgaaagttttcaaacgacagCATCCCGGGACAACAATTGTGACCGACAGCATCACTTCAGATGGCCTCACAGAATTCATCGAGAAGAAACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA