1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtggtgatgaatctcaaagctctctagtttcgactgagcggtggattttttcgtctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGTCCAGCCGGGTGGAAGCATAAGGGACCAAGATGCGATCGACTGCTGCAA
species | Selaginella moellendorffii |
transcript | EFJ15309 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTG CTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGEST: gi|169042566|gb|FE453712.1|FE453712
genomic: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTGgtgagtggtg ... tctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAG
EST: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTG CTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGEST: gi|169030447|gb|FE437858.1|FE437858
genomic: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTGgtgagtggtg ... tctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAG
EST: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTG CTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGEST: gi|169079526|gb|FE486892.1|FE486892
genomic: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTGgtgagtggtg ... tctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAG
EST: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTG CTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGEST: gi|169079527|gb|FE486893.1|FE486893
genomic: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTGgtgagtggtg ... tctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAG
EST: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTG CTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGEST: gi|169078055|gb|FE489386.1|FE489386
genomic: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTGgtgagtggtg ... tctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAG
EST: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTG CTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAG
genomic: AAGCGCTGTCAAAGGCGCTGCTCTTGCTAGCGACGCATTCTTTCCTTTTGgtgagtggtg ... tctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAG
gaatctcaaagctctctagtttcgactgagcggtggattttttcgtctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGTCCAGCCGGGTGGAAGCATAAGGGACCAAGATGCGATCGACTGCTGCAA
ttttttcgtctcccgc CT-rich tract
atttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggtgatgaatctcaaagctctctagtttcgactgagcggtggattttttcgtctcccgcagCTTGGAACGACGCCGTGGAAGAAGCGTGCAAGGCTGGAGTGAGCGTCATAGTCCAGCCGGGTGGAAGCATAAGGGACCAAGATGCGATCGACTGCTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC