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gtacgggccttgctatctatgtcgtaaaatctaatagtatttctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAGGTCTACCGCTACTTCCTG
species | Selaginella moellendorffii |
transcript | EFJ14843 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG GCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAGEST: gi|169054410|gb|FE462103.1|FE462103
genomic: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTGgtacgggcct ... ctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAG
EST: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG GCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGTGEST: gi|169020526|gb|FE429797.1|FE429797
genomic: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTGgtacgggcct ... ctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAG
EST: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG GCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGEST: gi|169108716|gb|FE510515.1|FE510515
genomic: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTGgtacgggcct ... ctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCG
EST: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG GCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGTGEST: gi|169063659|gb|FE471765.1|FE471765
genomic: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTGgtacgggcct ... ctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAG
EST: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG GCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGTGEST: gi|169105270|gb|FE506372.1|FE506372
genomic: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTGgtacgggcct ... ctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAG
EST: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG GCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGC
genomic: TGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTGgtacgggcct ... ctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGC
gtacgggccttgctatctatgtcgtaaaatctaatagtatttctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAGGTCTACCGCTACTTCCTG
atctaat putative branch site (score: 4)
tttctcatttc putative PPT
taaaatctaatagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgggccttgctatctatgtcgtaaaatctaatagtatttctcatttcagGCCCTGTTTGGTGGCAGCACAACTTTAGAGAAGCCATACCGTTCCTGCGAGGTCTACCGCTACTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC