1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgagataaaaaaaaaatccatgcttgagttcttggttctcacgctgcgatttttcgttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGCGTTTGGGTCCGCGGCAAAGAATTCCCGCTCGCAAGGGCCCAGTTTCTTT
species | Selaginella moellendorffii |
transcript | EFJ10097 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTCCATTGTTCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAG GTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGCEST: gi|169114411|gb|FE516297.1|FE516297
genomic: TGTCCATTGTTCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAGgtgagtgaga ... ttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGC
EST: TGTCCATTGTCCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAG GTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCGCCCACTAGCEST: gi|169030602|gb|FE437909.1|FE437909
genomic: TGTCCATTGTTCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAGgtgagtgaga ... ttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGC
EST: TGTCCATTGTCCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAG GTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCGCCCACTAGCEST: gi|169061332|gb|FE470406.1|FE470406
genomic: TGTCCATTGTTCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAGgtgagtgaga ... ttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGC
EST: TGTCCATTGTTCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAG GTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGCEST: gi|169018870|gb|FE427055.1|FE427055
genomic: TGTCCATTGTTCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAGgtgagtgaga ... ttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGC
EST: TGTCCATTGTCCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAG GTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCGCCCACTAGC
genomic: TGTCCATTGTTCGATCCAAAGGAGTGCCGCTCCCTCCAGATTGCGTCCAGgtgagtgaga ... ttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGC
aaaaatccatgcttgagttcttggttctcacgctgcgatttttcgttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGCGTTTGGGTCCGCGGCAAAGAATTCCCGCTCGCAAGGGCCCAGTTTCTTT
ttctcac putative branch site (score: 9)
tttttcgttcttcgc putative PPT
attttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagataaaaaaaaaatccatgcttgagttcttggttctcacgctgcgatttttcgttcttcgcagGTTCTCGAGGAGAGTTTGACGTGGGAAGAGGTCCAATGGTCTCCCACTAGCGTTTGGGTCCGCGGCAAAGAATTCCCGCTCGCAAGGGCCCAGTTTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA