1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gcgagttttaaacttttttatttttatatttctgatgtattcttttgtctaaatactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAGAACCCATTCGTCAGAGACTCTCAGAGAGAACGGAACAAGAAGGTGCCA
species | Selaginella moellendorffii |
transcript | EFJ07343 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAG GGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAEST: gi|169113824|gb|FE515372.1|FE515372
genomic: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAGgcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
EST: AAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAG GGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAEST: gi|169036320|gb|FE444697.1|FE444697
genomic: AAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAGgcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
EST: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAG GGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAEST: gi|169024988|gb|FE434640.1|FE434640
genomic: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAGgcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
EST: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAG GGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAEST: gi|169113823|gb|FE515371.1|FE515371
genomic: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAGgcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
EST: ACTTGCAGGCAATGAAAGAC-ACCAGG GGAGAGTTGCAATACTTTATAGGTGTGCAAC-TGNATGGGAGTGAGTACAEST: gi|169046223|gb|FE456382.1|FE456382
genomic: ACTTGCAGGCAATGAAAGACAACCA-Ggcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTG-ATGGGAGTGAGTACA
EST: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAG GGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAEST: gi|169115294|gb|FE517010.1|FE517010
genomic: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAGgcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
EST: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAG GGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAEST: gi|169052748|gb|FE461165.1|FE461165
genomic: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAGgcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
EST: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAG GGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
genomic: GCAAACCATTCTGGAACCTCTTCCACTTGCAGGCAATGAAAGACAACCAGgcgagtttta ... tactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATA
taaacttttttatttttatatttctgatgtattcttttgtctaaatactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAGAACCCATTCGTCAGAGACTCTCAGAGAGAACGGAACAAGAAGGTGCCA
gtctaaa putative branch site (score: 12)
tactttcc CT-rich tract
ttttttatttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagttttaaacttttttatttttatatttctgatgtattcttttgtctaaatactttccagGGAGAGTTGCAATACTTTATAGGTGTGCAACTTGATGGGAGTGAGTACATAGAACCCATTCGTCAGAGACTCTCAGAGAGAACGGAACAAGAAGGTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG