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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggatcacttaagaaaacctggttgtctcgtgaaatacgtaaaatacttttacactatcagGACATTCTTGACGGTATTGAGTTTGCAAGGGGACCTATGACTAGTAAATGGGGTCGAGTTCGCGAGGCTATGGGACATCCCGAACCTTTCCCTCTTTTCT

Basic information

species Selaginella moellendorffii
transcript EFJ07270
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042285|gb|FE453366.1|FE453366
EST:     TCAGTCACTCGGACGAGGTTTTACCGGAGCTTCTTGATCCTTTCATTCAG                         GACATTCTTGACGGTATTGAGTTTGCAAGGGGACCTATGACTAGTAAATGG
genomic: TCAGTCACTCGGACGAGGTTTTACCGGAGCTTCTTGATCCTTTCATTCAGgtttggatca ... acactatcagGACATTCTTGACGGTATTGAGTTTGCAAGGGGACCTATGACTAGTAAATGG
EST: gi|169040601|gb|FE449732.1|FE449732
EST:     TCAGTCACTCGGACGAGGTTTTACCGGAGCTTCTTGATCCTTTCATTCAG                         GACATTCTTGACGGTATTGAGTTTGCAAGGGGACCTATGACTAGTAAATGG
genomic: TCAGTCACTCGGACGAGGTTTTACCGGAGCTTCTTGATCCTTTCATTCAGgtttggatca ... acactatcagGACATTCTTGACGGTATTGAGTTTGCAAGGGGACCTATGACTAGTAAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttaagaaaacctggttgtctcgtgaaatacgtaaaatacttttacactatcagGACATTCTTGACGGTATTGAGTTTGCAAGGGGACCTATGACTAGTAAATGGGGTCGAGTTCGCGAGGCTATGGGACATCCCGAACCTTTCCCTCTTTTCT
                                        cttttac  CT-rich tract
                                 taaaatacttttaca  TA-rich tract