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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

Basic information

species Selaginella moellendorffii
transcript EFJ07216
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 3'ss of exon 9
gtacgcatgcattcttgctctttttt----ttctgttttttttgcgagtc-----gctcttgc--tcaagacttgc----ttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
||  |     ||||| |   ||  ||    ||  |  || || |   ||      | |  |    | || |||         | ||||||| | || || |||||  | |||||||| |||||||||||||||||||| || ||||| ||||| || ||||||||||| || || |||||||||
gttagtgccaattctggtgtttagttggccttgcgagttgttcggaggtgcagaagtttgtaacattaaaactgatcacacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 3'ss of exon 9
gtacgcatgcattcttgctcttttttttctgttttttttgcga--gtcgctcttgctcaagacttgctt------------ttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
|||  |||   |   || | |  |       | | |  || ||   | | |||||   |  || || ||            |||||||| || |||||||| ||  | || || ||||| ||||||||||| |||||||||||||| || |||||||| ||||| || ||||| |||||||||
gta-acatttttctatgatgtcctaaactgttctctcctgtgaccattgatcttgacaataacatgtttagtcatagcgccttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 3'ss of exon 8
---------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttt------tgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
               ||     || | | ||  ||| | |  | |     |||| |   | |||| |||   |||||| || |      | |||||  | |||||||| ||  | || |||||||||   |||||||| |||||||| |||||||||||||| || || ||||| || || |||||||||
gtaacatctgatttagttta-gtggaatattattctatgtagtttccccctttt-cttttagctcatgcaggagacttactgtacttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 3'ss of exon 9
gtacgcatgcattcttgctcttttttttctgtttttt----ttgcgagtcgctcttgctcaagacttgcttt-----tgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
||    ||    | |    | ||     | ||  |||     || |    | ||    ||  |  ||  |||     |  || | || ||||| || ||| | || |||||||  |||||||||||||||||  | || || || ||||||||||| ||||| ||||| |||||||||
gtttctatctcctgtcatccattagagacagtaatttaggtctgtggactgatccatttcttgtttttttttcttattatagATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 8
gtac-gcatgcattcttgctcttttt-tttctgttttttttgcgagtcgctcttgctcaagact--tgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
|||  |||||   |  |||    |   ||| | |||||    || ||   |||||    |   |  |  | | ||||||  | |||||||| || || ||||||||   ||||||||| || ||||| || ||||| || || ||||||||||| || ||||| |||||||||
gtattgcatgatgttgtgcaagctacatttttttttttgccacgggtatttcttgtgttaacttgatattatggcagGTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os02g14130.1 (Oryza sativa), 3'ss of exon 8
-------------------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgct-tttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                         ||||    |   |   |    ||| ||  ||||||| |           ||   | ||   |   | || | ||||  | |||||||| || || |||||||||   ||||||||||| |||||||| || || |  || |||||||||||||| || || |||||||||
gtagtatgttaggcactgctctacagtacatgcggtctaaagaaaatttcttaatgtttttctattttcataaactgaatgaattttctttgttggtagGTTCTTGGTACTCCAACACGTGAGGAAATCCGCTGCATGAATCCCAACTACACAGAATTCAGATTTCCTCAGATTAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G121790_T01 (Zea mays), 3'ss of exon 8
----------------------gtac-gcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaa--gacttgctttt---gcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                      | ||   ||   || |       | |  |   |  | ||| | | |  |   |  |  |  || |||||||     |||||  | ||||| || || ||||||||||||  ||| ||||||||||||||||| |||||||  || |||||||| ||||| || || |||||||||
gtacttggtggttctgcagactgcactatattagttgtaaagaaatgtactacctagtgttttctatttccatgtattggatggatttgctttgctgacagGTTCTTGGTACCCCAACGCGCGAGGAAATCCGATGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G024151_T01 (Zea mays), 3'ss of exon 8
------gtacgca-tgcattcttgctcttttttttctgttttttt-tgcgagtcgctcttgctcaa---gacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
      ||  |   | ||  ||||    || | |||| |       |   |   | ||   |  ||   || ||  | | ||||||| | ||||| || ||  | || ||||| ||||||||||| ||||| ||||| |||||||||||||| || || ||||| || || |||||||||
gtaattgtcggttctacaagcttgtgaattgtcttctatagaagcataaaatctgatcacccctaaaatgattttgtatggcagGTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G109624_T01 (Zea mays), 3'ss of exon 9
gtacgcatgcattct----tgctcttttttttctgtt--ttttttgcgagtcgctcttgctcaagacttgcttttgca-gGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
||  ||||    | |    |||  |       ||| |  |  ||||        | ||  ||    | |  |  | || | | || |||||||| ||  | ||||||||||  |||||||||||||| ||  | || || |||||||||||||| ||||| ||||| |||||||||
gtttgcatctgctatcaaatgccatgaaaccactggtgatactttgtagactaatgtttttctttcccttttgatccaagATTTTGGGTACTCCAACAAGAGAGGAAATCAGGTGCATGAATCCAAATTATTCTGAATTCAAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G151916_T01 (Zea mays), 3'ss of exon 8
----------------------gtac-gcatgcattcttgctcttttttttctgtttt-ttttgcgagtcgctcttgctcaa--gacttgctttt---gcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                      | ||   ||   ||||       | | ||  ||    |||| | | |  |   |  | ||  || |||||||     |||||  | |||||||| || || |||||||||   || ||||||||||||||||| |||||||  || |||||||| ||||| || || |||||||||
gtacttggttgttctgctgactgcactatattagttctaaagaaatgtgttaagtagggtttttctatttccatgtattgaatggatttgctttgctgacagGTTCTTGGTACTCCAACACGTGAGGAAATCCGTTGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM5G835235_T02 (Zea mays), 3'ss of exon 8
---------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG----
          |||  ||   |      |||| |   |     |   ||  || || | |||| |      |||| |  ||||||| | |||||||| ||  | || ||||| ||||||||||| || || ||||| |||||||||||||| || || ||||| || || |||||||||    
gtatcaattttacaaatttgtaaactatcttctgcatagacataaattttga-tcacacttgatttgattttgcatc-gcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGGTGT

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM5G835235_T04 (Zea mays), 3'ss of exon 8
---------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
          |||  ||   |      |||| |   |     |   ||  || || | |||| |      |||| |  ||||||| | |||||||| ||  | || ||||| ||||||||||| || || ||||| |||||||||||||| || || ||||| || || |||||||||
gtatcaattttacaaatttgtaaactatcttctgcatagacataaattttga-tcacacttgatttgattttgcatc-gcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G131853_T01 (Zea mays), 3'ss of exon 9
------gtacgc-atgcattcttgctcttttttttctgtt--ttttttgcgagtcg--ctcttgctcaagacttgcttttgc--agGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
       |  || ||  | || ||   |    |  ||| |  |  ||||   |  |     ||  ||    ||| |||   |  || | || |||||||| ||  | ||||| ||||  |||||||||||||| ||  | || || |||||||||||||| ||||| ||||| |||||||||
gtttgcatctgctatcaaatcgtgtcatgaaatcactggtggtactttgtaggctgaatgttttttcttctctttcttcatccaagATTTTGGGTACTCCAACAAGAGAGGAGATCAGGTGCATGAATCCAAATTATTCCGAATTCAAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G075992_T01 (Zea mays), 3'ss of exon 5
gtacgcatgcattcttgctctt-----ttttttctgttttttttgcgagtcgctcttgctca---agacttgctttt---gcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG----
|||    ||  ||||| |  ||     |||    || |  ||   |   ||    |  ||||   || |||  ||||    |||||  |||||||||| || || || ||||| ||  ||||||||||||||||||| || |||||||| || || || ||||| || || ||||||||     
gtaatagtgacttctttcaattgaagatttagcttgctagttacacatttccagttgactcatggaggcttatttttctttcagGTTCTAGGTACTCCAACACGGGATGAAATTAAGCGCATGAATCCAAACTACACCGAATTTAAGTTTCCGCAAATCAAAGCTCACCCATGGCACAAAGTAA

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 9
---------------------------gtacgcatgcattcttgctcttttt--tttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                            |        |  |||| |  |     | || || | |||  || ||      ||  ||    ||||||| | ||||  | || ||||| ||  | || || || || ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
tgtttgaatcactgattctctgatcaatttgatggataggcttggttgtcacaatgtcagtatctttaacgtgtaaac--tgtccacttgttgctttggtagGTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA07G08320.1 (Glycine max), 3'ss of exon 9
------------------------------------------------gtacgcatgcattct--tgctcttttttttctgttt-tttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                                 |   ||  | |||    | | | || | |||  || ||| | | |   |  |||  | |  |  | ||| |  ||||||| || || || ||  | || ||||| |  |||||||||||||||||||  || |||||||| |||||||||||||| || || |||||||||
gtacattttttttgtgttcttctgtatactgttcccttgttttgctttatgatcagactttccaaagttgtgttctgtctacttatttcttcaatctgagctt--ttattatgtacttctatagGTCTTGGGAACACCCACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA06G42840.1 (Glycine max), 3'ss of exon 8
-----gtacgcatg-cattcttgct-cttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
     ||     ||  |||  || | |  |  || | |  | | |    ||      ||  | | |  |   | ||| ||||  | |||||||| ||||| |||||||||   |||||||| ||||| || || || ||||  ||||||||||||||||| ||||| |||||||||
gtgatgtctctttgatattagtgttgccatgattgcagaatatatcttcagagatcattatttaggtgtc-ttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA12G15470.2 (Glycine max), 3'ss of exon 8
------gtacgcatgcattcttg-ctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
         |   |  ||   || |||  |   ||      | | |  |    | |  |  |  |||  |  | ||| ||||  | |||||||| || ||||||||||||   || ||||| ||||| || || |||||||  ||||||||||||||||| ||||| |||||||||
gtgatgtcccttctatatgagtgtctccatggattgcagaatatatctgcagagataattatttagatgtcttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA19G41420.2 (Glycine max), 3'ss of exon 9
--------------------------gtacgcatgcattcttgctcttttt--tttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                           |    |   |  ||||||  |     | || || | |||  || ||    |     ||    ||||||| | ||||  | || ||||| ||  | || || || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||| |||||||||
gtttgaatcactgattctctgatcaatttgatagataggcttgcttgtcacaatgtcagtatctttaacgtgtaag-cacatccactttttgctttggtagGTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 9
-----------------------------------------------gtacgcatgcattctt--gctcttttttttctgttt-tttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                                |   ||| | |||    | | | ||   |||| || ||| | | |   |  |||  |||  |  | ||| |  || | || || || || ||  | || ||||| |  |||||||||||||||||||  || |||||||| |||||||| ||||| || || |||||||||
gtacattttcatgtgttcttcagaatactgtccccttgttttactttatgatcatactttccaaagttgtgttcggtctgcttatttcttcaatctgagctt--tcattatgtacttctatagATTTTGGGAACACCCACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATCAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 9
---------------------------gtacgc-atgca-ttcttgctcttttttttctgttttttttgcg--agtcgctcttgctcaagacttg-cttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                           || |   ||    ||||||    ||   | |||||  |||||    | |   |||   |  |    || |   |  || |||| || || || ||  | || ||||| || |||||||||||||| ||||| || |||||||| |||||||| ||||| || || ||||| |||
gtaaagtttattgtgttctttatccttgtgctttataaggttcttgaaagttgcatcctgttggttttggatcattgaatctgagtgtaattatgtccactatagATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GLYMA18G45960.1 (Glycine max), 3'ss of exon 9
---------------------------------gtacgcatgc--attcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG-
                                  || || |    |   ||||    | ||   |||   || |   |   |    |  | |  |  |||  |   || |||| || || || ||  | || ||||| || |||||||||||||| ||||| || |||||||| |||||||| ||||| || || ||||| ||| 
taaagttaattgtgttctttatccttgtgttttataagcttcttgaaagttgcatcctattggttgtggattatagaatctgagtgtaattattatgtgcact-atagaTCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 3'ss of exon 10
--------------------------------------------------------------------------------------------------------gtacgcatgcattcttgct-cttttttttctgttttttttgcg-agtcgctcttgctcaagacttgcttt---tgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                                                                                         |    ||  |   || |  |  |||||   ||     | |   | || |||||  |      ||  ||    ||||||| || ||||| || ||  | ||||| |||||||||||||||||||||||||| || ||||| || |||||||| ||| | ||||| |||||||||
gtagtatttttgctatcaattcttttagggttagttgtatttacaaagaaaatgacatctttagagctggcactgactaatagtttctcactgctgattatattttttttataaaactttaccaccatttttgtagtaggactcgtacattctctcttcatggttttttaattgtcatgcagGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 3'ss of exon 9
----------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaa--gacttgcttt---------tgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                | | |||   |   |||   |  |   |||| |||    |  |       || || |    | |||||||         ||||||| |||||||| || ||  | || |||||||| ||||||||||||||||| || || |||||||| || ||||| ||| | ||||| |||||||||
cgtattcagtatagaagaaagcagtaacctttggattgctcagtctgatttcgaggaaaccttggttttcttatttcatttgctttgatatgtcatgcagGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------------------------gtacgcatgcattcttg--ctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgc-agGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                             |  |  ||   |||       |  ||       ||| |||| |   |   ||   |  |   |    | | | ||||  | || || || ||||| ||||||||||| || |||||||||||||| || |||||||| ||||| || || || || || ||||||||||||
gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
--------------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaa-------gacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                     ||   |  ||||||| ||| | | |   | || |  |         |  ||||  ||          ||| |||||||||| || || ||||| ||  | |||||||| ||||||||||| || ||||| || ||||| || ||||| || |||||||| || || |||||||||
tcattccaatttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 9
-------------------gtacgcatgcattcttgctcttttttttctgtt--ttttttgcgagtcgctcttgctcaagacttgctttt------gcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                   |  |   | |||  |   | |  ||||  | |   |   ||   | |   | ||   ||| | || ||| |      |||||| || || || || ||  | |||||||| || ||||||||||| || ||||| || ||||| ||||| || |||||||| || || |||||||||
tggtgctgagtctgcagttgctcctttccatcttgtttgtgattttagtatccatcccttattaatgtgttttctacaatattttcttatttgcatgcagGTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 3'ss of exon 8
-----------gtacgcatgcattcttgctcttttttttctgttttttttgc----gagtcgctcttgctcaagact---tgctttt----------gcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
            |   || | ||| |||     |    |||||  |||   |      |  ||    |   |||| |   ||  |||          ||||||||| || || |||||  | ||||| || ||||| ||||||||||||||||| || ||||| ||||| || || ||  | ||||| |||||||||
atgctacttctatttaca-gaatttttgaaagctcaaatctgtcatttaaacccaaaggaagcctcagaataagattccatgtgtttaaattgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------------------------------------------------------------------------------------------------------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaag-acttgcttttgc-agGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                                                                                                        |  ||     ||  | | | |   ||  ||    |   |  |     ||  ||   |      || |  ||  |||| || || || || || |||||||| || || ||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||| |||||||||
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------------------------------------------------------------------gtacgcatgcattcttgctct---tttttttctgttttttttgc--gagtcgctctt----gctcaagact----------tgcttttg-cagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                                                                                   ||  ||     || |||||     |  | ||  | |  |   ||  ||||    ||     ||| | || |          || | ||| ||||| ||||| || ||||| || ||||| || || ||||||||||| |||||||||||||| ||||| ||||| ||||| || || || |||||||||
gtatgttatacatggtagagtggaagcatatggagctgaagtcgtttgtactgatgtttgatgtgtatcgattaaaagtattgtattatatttaaagatgttagctgctcttgttgcttcgggtggtgttgcggtgatagcgcaagagtgatactgtagagcttatgagtaggcggatggtgatgttgacagGTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAG

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------gtacgcatgcattcttgctcttttttttctgt-----tttttttgc----gagtcgctcttgctcaagacttgcttt--tgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                       |    | ||| | || | | |   | ||  |      || |  |||    ||||   | ||  | | ||   | |||   |||||| || || || || ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || || || || || || || |||||||| 
gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------------------------------------------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttg-cagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                                          |  |  || |    || | | || ||  ||||   | || |  | ||  |  |   |   || | | || ||||| || || || || ||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||| || |||||||| 
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA

upper sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------gtac--gcatgc--attcttgctctttt-----ttttctgttttttt----tgcgagt-cgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                         ||||  || |||   || |  || ||       | || || |  | |    || ||||  | | |||   |  ||||| | | |||||| || || || || ||||| ||||| || || ||||||||||| |||||||||||||| ||||| || || || || || || || |||||||| 
gtagggcacaggcggtgcacggcgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggggtgttatgatgctgtggagtgtgagtatgttattgaggagtacttg-tgtggcagGTGTTGGGAACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCGTGGCACAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169032924|gb|FE441552.1|FE441552
EST:     CTTTGTTCCCAGGAGAGAGCGGCGTGGATCAGCTAGTGGAGATTATAAAGACTTGCTTTTGCAG            
genomic: CTTTGTTCCCAGGAGAGAGCGGCGTGGATCAGCTAGTGGAGATTAT--A-A-----------AGgtacgcatgc .




















RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 52

CCTTTGTTCCCAGGAGAGAGCGGCGTGGATCAGCTAGTGGAGATTATAAAGgtacgcatgc ... gcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG
                                          cttgctttt  CT-rich tract
     tttttctgtttttttt  TA-rich tract