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gtgagtcaaatcccttcccgaatttctcctcctttgttttggctcatccctgtcctcttcccagGTAAAATAAGTGTTACGAGAGTAGGATGGTCAGCAACATTCTTTATTCTGGCGGGCTTGGCCGTTGTTGGAGCTGTTGGCTACGTTATTTACAAGTATAG
species | Selaginella moellendorffii |
transcript | EFJ06539 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAGTGCGACGGAAATCTCCTCTACATCAAAGAGCACGACACTTGCATCA GTAAAATAAGTGTTACGAGAGTAGGATGGTCAGCAACATTCTTTATTCTGGEST: gi|169082332|gb|FE489505.1|FE489505
genomic: CCAGTGCGACGGAAATCTCCTCTACATCAAAGAGCACGACACTTGCATCAgtgagtcaaa ... ctcttcccagGTAAAATAAGTGTTACGAGAGTAGGATGGTCAGCAACATTCTTTATTCTGG
EST: CCAGTGCGACGGAAATCTCCTCTACATCAAAGAGCACGACACTTGCATCA GTAAAATAAGTGTTACGAGAGTAGGATGGTCAGCAACATTCTTTATTCTGG
genomic: CCAGTGCGACGGAAATCTCCTCTACATCAAAGAGCACGACACTTGCATCAgtgagtcaaa ... ctcttcccagGTAAAATAAGTGTTACGAGAGTAGGATGGTCAGCAACATTCTTTATTCTGG
atcccttcccgaatttctcctcctttgttttggctcatccctgtcctcttcccagGTAAAATAAGTGTTACGAGAGTAGGATGGTCAGCAACATTCTTTATTCTGGCGGGCTTGGCCGTTGTTGGAGCTGTTGGCTACGTTATTTACAAGTATAG
tttctcctcctttgtt CT-rich tract
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcaaatcccttcccgaatttctcctcctttgttttggctcatccctgtcctcttcccagGTAAAATAAGTGTTACGAGAGTAGGATGGTCAGCAACATTCTTTATTCTGGCGGGCTTGGCCGTTGTTGGAGCTGTTGGCTACGTTATTTACAAGTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT