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gtaaacagcgcttgtgtatttggaatacttttcttatatcttctctcttctttcctctctcttagCTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTCTGGAGCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAAT
species | Selaginella moellendorffii |
transcript | EFJ38679 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAG CTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTEST: gi|169100699|gb|FE502159.1|FE502159
genomic: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAGgtaaacagcg ... tctctcttagCTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGT
EST: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAG CTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTEST: gi|169063506|gb|FE471924.1|FE471924
genomic: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAGgtaaacagcg ... tctctcttagCTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGT
EST: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAG CTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTEST: gi|169038284|gb|FE445296.1|FE445296
genomic: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAGgtaaacagcg ... tctctcttagCTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGT
EST: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAG CTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGT
genomic: GCCTGCGGTGGGAAGAGCTACTTTGGTGCGCTGCTATGCTGTGCCTGGAGgtaaacagcg ... tctctcttagCTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGT
cttgtgtatttggaatacttttcttatatcttctctcttctttcctctctcttagCTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTCTGGAGCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAAT
tacttttcttatatct CT-rich tract
aatacttttcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacagcgcttgtgtatttggaatacttttcttatatcttctctcttctttcctctctcttagCTCGGATGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTCTGGAGCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG