1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtagctgctcctacgaaactcgttggctaaattttggatgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTCCACCCGGATGGATGTTTAGAGATAGTCGATCGAAAGAAGGATATCGTTA
species | Selaginella moellendorffii |
transcript | EFJ35799 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAG ACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATTGGGCAGTTCEST: gi|169029948|gb|FE437008.1|FE437008
genomic: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTC
EST: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAG ACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATTGGGCAGTTCEST: gi|169038462|gb|FE446163.1|FE446163
genomic: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTC
EST: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAG ACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTCEST: gi|169066418|gb|FE474641.1|FE474641
genomic: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTC
EST: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAG ACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATTGGGCAGTTCEST: gi|169102019|gb|FE507803.1|FE507803
genomic: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTC
EST: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAG ACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATTGGGCAGTTCEST: gi|169074866|gb|FE483787.1|FE483787
genomic: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTC
EST: AACCATCGGCTATTTCAAGAACCAAGCGAANACCGACGAAGTTTNACA-G ACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAEST: gi|169032302|gb|FE439351.1|FE439351
genomic: AACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTT-ACAAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATA
EST: AACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACNAAG ACG-ACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATTGGGCAGTTEST: gi|169029947|gb|FE437007.1|FE437007
genomic: AACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTAC-AAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTT
EST: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAG ACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATTGGGCAGTTC
genomic: TAACCATCGGCTATTTCAAGAACCAAGCGAAAACCGACGAAGTTTACAAGgtaagtagct ... atgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTC
gtaagtagctgctcctacgaaactcgttggctaaattttggatgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTCCACCCGGATGGATGTTTAGAGATAGTCGATCGAAAGAAGGATATCGTTA
ggctaaa putative branch site (score: 40)
taaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagctgctcctacgaaactcgttggctaaattttggatgatcgtagACGGACGAGAATGGCCTGCGATGGTTTTACACGGGCGATATAGGGCAGTTCCACCCGGATGGATGTTTAGAGATAGTCGATCGAAAGAAGGATATCGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG