1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtttattttgcagtatttttagcagcacatctttaacttctctgtaaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAAGATGCTTTGAATGCGACGAAG
species | Selaginella moellendorffii |
transcript | EFJ33580 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAAEST: gi|169098700|gb|FE500238.1|FE500238
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAACTAAAAGAAAAGAAGTTAAGAGTGGAAEST: gi|169024290|gb|FE432551.1|FE432551
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAACTAAAAGAAAAGAAGTTAAGAGTGGAAEST: gi|169030365|gb|FE437828.1|FE437828
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAACTAAAAGAAAAGAAGTTAAGAGTGGAAEST: gi|169081608|gb|FE491262.1|FE491262
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAAEST: gi|169021473|gb|FE428560.1|FE428560
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAACTAAAAGAAAAGAAGTTAAGAGTGGAAEST: gi|169028066|gb|FE435424.1|FE435424
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAACTAAAAGAAAAGAAGTTAAGAGTGGAAEST: gi|169024240|gb|FE435218.1|FE435218
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
EST: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG GTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
genomic: AATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAGgtaagtttat ... taaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAA
agtttattttgcagtatttttagcagcacatctttaacttctctgtaaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAAGATGCTTTGAATGCGACGAAG
ctttaac putative branch site (score: 12)
cttctctgt CT-rich tract
agtattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttattttgcagtatttttagcagcacatctttaacttctctgtaaattgaagGTTGGTGCACAAACTGAGACAGAATTAAAAGAAAAGAAGTTAAGAGTGGAAGATGCTTTGAATGCGACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG