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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctccagtgaaaagaatgtttttttttcttggtccttagtttttatatttcagTGGAGAAGAGGCATACGTGAAGATTCGAGCGGGTGCCACTCTTGTGCAACTGTATACTACTTTTGCATATGAAGGCCCAGCGCTTATACCCCGAATCAAA

Basic information

species Selaginella moellendorffii
transcript EFJ33353
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169045576|gb|FE452537.1|FE452537
EST:     GGTAAAATTCCACTCGTTGGCTGTGGCGGTATAAGCAG                         TGGAGAAGAGGCATACGTGAAGATTCGAGCGGGTGCCACTCTTGTGCAACT
genomic: GGTAAAATTCCACTCGTTGGCTGTGGCGGTATAAGCAGgtatgttctc ... tatatttcagTGGAGAAGAGGCATACGTGAAGATTCGAGCGGGTGCCACTCTTGTGCAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctccagtgaaaagaatgtttttttttcttggtccttagtttttatatttcagTGGAGAAGAGGCATACGTGAAGATTCGAGCGGGTGCCACTCTTGTGCAACTGTATACTACTTTTGCATATGAAGGCCCAGCGCTTATACCCCGAATCAAA
                                         tttttat  CT-rich tract
           aaaagaatgttttttt  TA-rich tract